Publications by authors named "Veniamin Fishman"

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Chromatin landscape, transcriptomic and ChIP-seq profiling of Anopheles stephensi MSQ43 cell line.
Varvara Lukyanchikova, Miroslav Nuriddinov, Anna Khabarova, Maria Gridina, Andrey Popov, Veniamin Fishman

Sci Data· September 2025

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Direction and modality of transcription changes caused by TAD boundary disruption in Slc29a3/Unc5b locus depends on tissue-specific epigenetic context.
Paul Salnikov, Polina Belokopytova, Alexandra Yan, Emil Viesná, Alexey Korablev, Veniamin Fishman

Epigenetics Chromatin· August 2025

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DNA and Histone Modifications Identify a Putative Controlling Element (CE) on the X Chromosome of .
Olga V Posukh, Victor V Shloma, Polina A Skrypnik, Daniil A Maksimov, Polina A Antoshina, Veniamin S Fishman

Cells· August 2025

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Charm is a flexible pipeline to simulate chromosomal rearrangements on Hi-C-like data.
Miroslav Nuriddinov, Polina Belokopytova, Veniamin Fishman

NAR Genom Bioinform· June 2025

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EHMT2 as a Candidate Gene for an Autosomal Recessive Neurodevelopmental Syndrome.
Laura Machado Lara Carvalho, Jessica Rzasa, Jennifer Kerkhof, Haley McConkey, Veniamin Fishman

Mol Neurobiol· May 2025

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Combining chromosome conformation capture and exome sequencing for simultaneous detection of structural and single-nucleotide variants.
Maria Gridina, Timofey Lagunov, Polina Belokopytova, Nikita Torgunakov, Miroslav Nuriddinov, Veniamin Fishman

Genome Med· May 2025

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GENA-LM: a family of open-source foundational DNA language models for long sequences.
Veniamin Fishman, Yuri Kuratov, Aleksei Shmelev, Maxim Petrov, Dmitry Penzar

Nucleic Acids Res· January 2025

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A Mutation in the Familial Case of Primary Lymphedema: A Report.
Galina Koksharova, Natalia Kokh, Maria Gridina, Rustam Khapaev, Vadim Nimaev, Veniamin Fishman

Int J Mol Sci· May 2024

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Modification of the Hi-C Technology for Molecular Genetic Analysis of Formalin-Fixed Paraffin-Embedded Sections of Tumor Tissues.
Maria M Gridina, Yana K Stepanchuk, Miroslav A Nurridinov, Timofey A Lagunov, Nikita Yu Torgunakov, Veniamin S Fishman

Biochemistry (Mosc)· April 2024

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Towards Development of the 4C-Based Method Detecting Interactions of Plasmid DNA with Host Genome.
Alexandra P Yan, Paul A Salnikov, Maria M Gridina, Polina S Belokopytova, Veniamin S Fishman

Biochemistry (Mosc)· April 2024

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Structural variants in the Epb41l4a locus: TAD disruption and Nrep gene misregulation as hypothetical drivers of neurodevelopmental outcomes.
Paul Salnikov, Alexey Korablev, Irina Serova, Polina Belokopytova, Aleksandra Yan, Veniamin Fishman

Sci Rep· March 2024

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A germline chimeric KANK1-DMRT1 transcript derived from a complex structural variant is associated with a congenital heart defect segregating across five generations.
Silvia Souza da Costa, Veniamin Fishman, Mara Pinheiro, Andre Rodrigueiro, Maria Teresa Sanseverino

Chromosome Res· March 2024

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Expanding the list of sequence-agnostic enzymes for chromatin conformation capture assays with S1 nuclease.
Gridina Maria, Popov Andrey, Shadskiy Artem, Torgunakov Nikita, Kechin Andrey, Fishman Veniamin

Epigenetics Chromatin· December 2023

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A germline chimeric KANK1-DMRT1 transcript derived from a complex structural variant is associated with a congenital heart defect segregating across five generations.
Silvia Souza Costa, Veniamin Fishman, Mara Pinheiro, Andre Rodrigueiro, Maria Teresa Sanseverino

Res Sq· December 2023

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Lampbrush chromosome studies in the post-genomic era.
Alla Krasikova, Veniamin Fishman, Tatiana Kulikova

Bioessays· May 2023

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Function and Evolution of the Loop Extrusion Machinery in Animals.
Evelyn Kabirova, Artem Nurislamov, Artem Shadskiy, Alexander Smirnov, Andrey Popov, Veniamin Fishman

Int J Mol Sci· March 2023

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Cell type-specific interpretation of noncoding variants using deep learning-based methods.
Maria Sindeeva, Nikolay Chekanov, Manvel Avetisian, Tatiana I Shashkova, Nikita Baranov, Veniamin Fishman

Gigascience· March 2023

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Annotation of uORFs in the OMIM genes allows to reveal pathogenic variants in 5'UTRs.
Alexandra Filatova, Ivan Reveguk, Maria Piatkova, Daria Bessonova, Olga Kuziakova, Veniamin Fishman

Nucleic Acids Res· February 2023

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A Cre-LoxP-based approach for combinatorial chromosome rearrangements in human HAP1 cells.
Anna Khabarova, Galina Koksharova, Pavel Salnikov, Polina Belokopytova, Roman Mungalov, Veniamin Fishman

Chromosome Res· February 2023

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Method for the Isolation of "RNA-seq-Quality" RNA from Human Intervertebral Discs after Mortar and Pestle Homogenization.
Artemii A Ivanov, Olga N Leonova, Daniil S Wiebe, Alexsandr V Krutko, Mariya M Gridina, Veniamin S Fishman

Cells· November 2022

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Multilevel view on chromatin architecture alterations in cancer.
Maria Gridina, Veniamin Fishman

Front Genet· November 2022

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Editorial: The role of high-order chromatin organization in gene regulation.
Veniamin Fishman, Alexey V Pindyurin

Front Genet· October 2022

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Single-Cell DNA Methylation Analysis of Chicken Lampbrush Chromosomes.
Artem Nurislamov, Timofey Lagunov, Maria Gridina, Alla Krasikova, Veniamin Fishman

Int J Mol Sci· October 2022

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Anopheles mosquitoes reveal new principles of 3D genome organization in insects.
Varvara Lukyanchikova, Miroslav Nuriddinov, Polina Belokopytova, Alena Taskina, Jiangtao Liang, Veniamin Fishman

Nat Commun· April 2022

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Derivation of Ringed Seal () Induced Multipotent Stem Cells.
Violetta R Beklemisheva, Polina S Belokopytova, Veniamin S Fishman, Aleksei G Menzorov

Cell Reprogram· December 2021

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