Publications by authors named "Venugopalan D Nair"

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Multi-omic identification of key transcriptional regulatory programs during endurance exercise training in rats.
Gregory R Smith, Bingqing Zhao, Malene E Lindholm, Archana Raja, Mark Viggars, Venugopalan D Nair

bioRxiv· July 2025

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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise.
Aliza B Rubenstein, Gregory R Smith, Zidong Zhang, Xi Chen, Toby L Chambers, Venugopalan D Nair

Genome Res· July 2025

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Comprehensive guide for epigenetics and transcriptomics data quality control.
Arianna Comendul, Frederique Ruf-Zamojski, Colby T Ford, Pankaj Agarwal, Elena Zaslavsky, Venugopalan D Nair

STAR Protoc· March 2025

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Preliminary Insights into the Acute Molecular Responses in C2C12 Myotubes to Hyperthermia and Insulin Treatment.
Ross Gillette, Irene C Turnbull, Venugopalan D Nair, Angelo Gaitas

bioRxiv· March 2025

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Molecular Transducers of Physical Activity Consortium (MoTrPAC): human studies design and protocol.

J Appl Physiol (1985)· September 2024

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Integrated epigenomic exposure signature discovery.
Jared Schuetter, Angela Minard-Smith, Brandon Hill, Jennifer L Beare, Alexandria Vornholt, Venugopalan D Nair

Epigenomics· September 2024

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Protocol for high-throughput DNA methylation profiling in rat tissues using automated reduced representation bisulfite sequencing.
Venugopalan D Nair, Hanna Pincas, Mary Anne S Amper, Yongchao Ge, Mital Vasoya

STAR Protoc· June 2024

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Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures.
Venugopalan D Nair, Hanna Pincas, Gregory R Smith, Elena Zaslavsky, Yongchao Ge

Cell Genom· June 2024

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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise.
Aliza B Rubenstein, Gregory R Smith, Zidong Zhang, Xi Chen, Toby L Chambers, Venugopalan D Nair

bioRxiv· October 2023

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Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D Nair

Nat Comput Sci· September 2023

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Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D Nair

Nat Comput Sci· July 2023

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A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation.
Weiguang Mao, Clare M Miller, Venugopalan D Nair, Yongchao Ge, Mary Anne S Amper

Mol Syst Biol· May 2023

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Activating Transcription Factor 3 Stimulates Follicle-Stimulating Hormone-β Expression In Vitro But Is Dispensable for Follicle-Stimulating Hormone Production in Murine Gonadotropes In Vivo.
Carlos A I Alonso, Caroline D David, Chirine Toufaily, Ying Wang, Xiang Zhou, Venugopalan D Nair

Endocrinology· March 2023

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Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease.
Zijun Zhang, Natalie Sauerwald, Antonio Cappuccio, Irene Ramos, Venugopalan D Nair

Cell Rep Methods· February 2023

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Transcriptome signatures preceding the induction of anti-stalk antibodies elicited after universal influenza vaccination.
Teresa Aydillo, Ana S Gonzalez-Reiche, Daniel Stadlbauer, Mary Anne Amper, Venugopalan D Nair

NPJ Vaccines· December 2022

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SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures.
Rhonda A Lizewski, Rachel S G Sealfon, Sang Woo Park, Gregory R Smith, Chad K Porter, Venugopalan D Nair

Epidemiology· November 2022

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Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection.
Natalie Sauerwald, Zijun Zhang, Irene Ramos, Venugopalan D Nair, Alessandra Soares-Schanoski

Cell Syst· November 2022

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Earlier detection of SARS-CoV-2 infection by blood RNA signature microfluidics assay.
Antonio Cappuccio, Jennifer Geis, Yongchao Ge, Venugopalan D Nair, Naveen Ramalingam

Clin Transl Discov· September 2022

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Multi-omics profiling of single nuclei from frozen archived postmortem human pituitary tissue.
Natalia Mendelev, Michel Zamojski, Mary Anne S Amper, Wan Sze Cheng, Hanna Pincas, Venugopalan D Nair

STAR Protoc· June 2022

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Optimization of the Omni-ATAC protocol to chromatin accessibility profiling in snap-frozen rat adipose and muscle tissues.
Venugopalan D Nair, Mital Vasoya, Vishnu Nair, Gregory R Smith, Hanna Pincas

MethodsX· April 2022

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Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19.
Alessandra Soares-Schanoski, Natalie Sauerwald, Carl W Goforth, Sivakumar Periasamy, Dawn L Weir, Venugopalan D Nair

Front Immunol· April 2022

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Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults.
Aliza B Rubenstein, J Matthew Hinkley, Venugopalan D Nair, German Nudelman, Robert A Standley

Am J Physiol Endocrinol Metab· March 2022

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Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms.
Zidong Zhang, Michel Zamojski, Gregory R Smith, Thea L Willis, Val Yianni, Venugopalan D Nair

Cell Rep· March 2022

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Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle.
Venugopalan D Nair, Mital Vasoya, Vishnu Nair, Gregory R Smith, Hanna Pincas

Genomics· November 2021

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A human liver cell-based system modeling a clinical prognostic liver signature for therapeutic discovery.
Emilie Crouchet, Simonetta Bandiera, Naoto Fujiwara, Shen Li, Hussein El Saghire, Venugopalan D Nair

Nat Commun· September 2021

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