Publications by authors named "Vigneshwar Ramakrishnan"

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A network pharmacological approach for the identification of potential therapeutic targets of - a complex traditional Siddha formulation.
Agnes Preethy H, Yanamandram Balasubramanian Venkatakrishnan, Vigneshwar Ramakrishnan, Uma Maheswari Krishnan

J Biomol Struct Dyn· October 2025

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Targeting dual substrate pockets of colistin resistance conferring MCR-1 of with natural products: insights from high throughput virtual screening and molecular dynamics simulations.
Sathish Kumar Marimuthu, Vigneshwar Ramakrishnan, Subbiah Thamotharan

J Biomol Struct Dyn· August 2025

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Therapeutic efficacy of against phenylhydrazine-induced hemolytic anemia in rats.
Kayalvizhi Rajendran, David Raj Chellappan, Vigneshwar Ramakrishnan, Uma Maheswari Krishnan

J Tradit Complement Med· January 2025

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Protein feature engineering framework for AMPylation site prediction.
Hardik Prabhu, Hrushikesh Bhosale, Aamod Sane, Renu Dhadwal, Vigneshwar Ramakrishnan

Sci Rep· April 2024

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Comprehensive screening of marine metabolites against class B1 metallo-β-lactamases of using two-pronged approach.
Aathithya Diaz, Shripushkar G, Shruti Balaji, Jayapradha Ramakrishnan, Subbiah Thamotharan, Vigneshwar Ramakrishnan

J Biomol Struct Dyn· December 2023

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Effect of osmolytes on the EcoRI endonuclease: Insights into hydration and protein dynamics from molecular dynamics simulations.
Aathithya Diaz, Vigneshwar Ramakrishnan

Comput Biol Chem· August 2023

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Identification of Phase Separating Proteins With Distributed Reduced Alphabet Representations of Sequences.
Ashwin Lahorkar, Hrushikesh Bhosale, Aamod Sane, Vigneshwar Ramakrishnan, Valadi K Jayaraman

IEEE/ACM Trans Comput Biol Bioinform· April 2023

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and screening of new Delhi metallo-β-lactamase-1 inhibitors from endophytic spp.
Lalitha Cheepurupalli, Aathithya Diaz, Adithya Conjeevaram Gopal, Sudarshan Singh Rathore, Vigneshwar Ramakrishnan, Jayapradha Ramakrishnan

J Biomol Struct Dyn· December 2022

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Effect of glycerol on free DNA: A molecular dynamics simulation study.
Aathithya Diaz, Hari Balaji Jothiraman, Vigneshwar Ramakrishnan

J Mol Graph Model· July 2022

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Towards understanding the mechanism of action of a polyherbal formulation using a multi-pronged strategy.
H Agnes Preethy, Kayalvizhi Rajendran, Abhilipsha Mishra, Akhilasree Karthikeyan, David Raj Chellappan, Vigneshwar Ramakrishnan

Comput Biol Med· February 2022

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Support vector machine-based prediction of pore-forming toxins (PFT) using distributed representation of reduced alphabets.
Hrushikesh Bhosale, Vigneshwar Ramakrishnan, Valadi K Jayaraman

J Bioinform Comput Biol· October 2021

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Investigations on a polyherbal formulation for treatment of cognitive impairment in a cholinergic dysfunctional rodent model.
Kayalvizhi Rajendran, David Raj Chellappan, Shruthi Sankaranarayanan, Vigneshwar Ramakrishnan, Uma Maheswari Krishnan

Neurochem Int· December 2020

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Investigating the effect of charged amino acids on DNA conformation in EcoRI-DNA complex: a molecular dynamics simulation study.
Sreelakshmi Ramachandrakurup, Sumanth Ammapalli, Vigneshwar Ramakrishnan

J Biomol Struct Dyn· December 2017

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Effect of NaeI-L43K mutation on protein dynamics and DNA conformation: Insights from molecular dynamics simulations.
Sreelakshmi Ramachandrakurup, Vigneshwar Ramakrishnan

J Mol Graph Model· September 2017

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Identification of Glucose-Binding Pockets in Human Serum Albumin Using Support Vector Machine and Molecular Dynamics Simulations.
Preethi Ranganarayanan, Narmadha Thanigesan, Vivek Ananth, Valadi K Jayaraman, Vigneshwar Ramakrishnan

IEEE/ACM Trans Comput Biol Bioinform· December 2016

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Interaction of Tenebrio Molitor Antifreeze Protein with Ice Crystal: Insights from Molecular Dynamics Simulations.
L Ramya, Vigneshwar Ramakrishnan

Mol Inform· July 2016

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Dynamic and structural changes in the minimally restructuring EcoRI Bound to a minimally mutated DNA chain.
Vigneshwar Ramakrishnan, Srivatsan Jagannathan, Abdul Rajjak Shaikh, Raj Rajagopalan

J Biomol Struct Dyn· April 2016

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Dynamics and thermodynamics of water around EcoRI bound to a minimally mutated DNA chain.
Vigneshwar Ramakrishnan, Raj Rajagopalan

Phys Chem Chem Phys· September 2012

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Effects of polydisperse crowders on aggregation reactions: a molecular thermodynamic analysis.
Dhawal Shah, Aik Lee Tan, Vigneshwar Ramakrishnan, Jianwen Jiang, Raj Rajagopalan

J Chem Phys· February 2011

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Genome inventory and analysis of nuclear hormone receptors in Tetraodon nigroviridis.
Raghu Prasad Rao Metpally, Ramakrishnan Vigneshwar, Ramanathan Sowdhamini

J Biosci· January 2007

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