Publications by authors named "Vijaykumar Yogesh Muley"

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Host Transcriptional Responses to Viral Infections: RNA-Seq Analysis with Rsubread, HISAT2, and STAR with Public RNA-Seq Data.
Vijaykumar Yogesh Muley

Methods Mol Biol· June 2025

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Deciphering Host Differential Gene Expression in Viral Infections Through Public RNA-Seq Data from NCBI GEO.
Hien Thi Thu Le, Irsad Ahamad, Vijaykumar Yogesh Muley

Methods Mol Biol· June 2025

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Functional Insights Through Gene Ontology, Disease Ontology, and KEGG Pathway Enrichment.
Vijaykumar Yogesh Muley

Methods Mol Biol· June 2025

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Exploring Virus Protein Domains: Detection and Evolutionary Insights.
Vijaykumar Yogesh Muley

Methods Mol Biol· June 2025

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Systems-wide view of host-pathogen interactions across COVID-19 severities using integrated omics analysis.
Mairembam Stelin Singh, Anand Pyati, R Devika Rubi, Rajasekaran Subramanian, Vijaykumar Yogesh Muley

iScience· March 2024

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Role of diosgenin extracted from L in suppression of HIV-1 replication: An preclinical study.
Smita Rakshit, Ashwini More, Shraddha Gaikwad, Chandrabhan Seniya, Aniket Gade, Vijaykumar Yogesh Muley

Heliyon· January 2024

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Editorial: Gene expression: epigenetic and transcriptional regulation in neurodegenerative diseases and ageing.
Vijaykumar Yogesh Muley

Front Neurosci· December 2023

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Microbial colonization dynamics of the postnatal digestive tract of Bos indicus calves.
Carolina Robles-Rodríguez, Vijaykumar Yogesh Muley, María Laura González-Dávalos, Armando Shimada, Alfredo Varela-Echavarría

Anim Sci J· November 2023

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Prediction and Analysis of Transcription Factor Binding Sites: Practical Examples and Case Studies Using R Programming.
Vijaykumar Yogesh Muley

Methods Mol Biol· November 2023

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Deep Learning for Predicting Gene Regulatory Networks: A Step-by-Step Protocol in R.
Vijaykumar Yogesh Muley

Methods Mol Biol· October 2023

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Search, Retrieve, Visualize, and Analyze Protein-Protein Interactions from Multiple Databases: A Guide for Experimental Biologists.
Vijaykumar Yogesh Muley

Methods Mol Biol· July 2023

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Centrality Analysis of Protein-Protein Interaction Networks Using R.
Vijaykumar Yogesh Muley

Methods Mol Biol· July 2023

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Human transcriptional gene regulatory network compiled from 14 data resources.
Vijaykumar Yogesh Muley, Rainer König

Biochimie· February 2022

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Mathematical Programming for Modeling Expression of a Gene Using Gurobi Optimizer to Identify Its Transcriptional Regulators.
Vijaykumar Yogesh Muley

Methods Mol Biol· August 2021

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Mathematical Linear Programming to Model MicroRNAs-Mediated Gene Regulation Using Gurobi Optimizer.
Vijaykumar Yogesh Muley

Methods Mol Biol· August 2021

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Evolutionary Perspective and Expression Analysis of Intronless Genes Highlight the Conservation of Their Regulatory Role.
Katia Aviña-Padilla, José Antonio Ramírez-Rafael, Gabriel Emilio Herrera-Oropeza, Vijaykumar Yogesh Muley, Dulce I Valdivia

Front Genet· July 2021

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Conserved and divergent expression dynamics during early patterning of the telencephalon in mouse and chick embryos.
Vijaykumar Yogesh Muley, Carlos Javier López-Victorio, Jorge Tonatiuh Ayala-Sumuano, Adriana González-Gallardo, Leopoldo González-Santos

Prog Neurobiol· March 2020

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PDZ Domains Across the Microbial World: Molecular Link to the Proteases, Stress Response, and Protein Synthesis.
Vijaykumar Yogesh Muley, Yusuf Akhter, Sanjeev Galande

Genome Biol Evol· March 2019

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Bidirectional promoters exhibit characteristic chromatin modification signature associated with transcription elongation in both sense and antisense directions.
Rahul Kumar Jangid, Ashwin Kelkar, Vijaykumar Yogesh Muley, Sanjeev Galande

BMC Genomics· May 2018

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Cloning, characterization and transmission blocking potential of midgut carboxypeptidase A in Anopheles stephensi.
V VenkatRao, Surendra K Kumar, P Sridevi, Vijaykumar Yogesh Muley, R K Chaitanya

Acta Trop· April 2017

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Evaluation of physical and functional protein-protein interaction prediction methods for detecting biological pathways.
Vijaykumar Yogesh Muley, Akash Ranjan

PLoS One· July 2013

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Effect of reference genome selection on the performance of computational methods for genome-wide protein-protein interaction prediction.
Vijaykumar Yogesh Muley, Akash Ranjan

PLoS One· November 2012

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