Publications by authors named "Vikas Upadhyay"

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Rank-ordering of known enzymes as starting points for re-engineering novel substrate activity using a convolutional neural network.
Vikas Upadhyay, Veda Sheersh Boorla, Costas D Maranas

Metab Eng· July 2023

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dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design.
Lin Wang, Vikas Upadhyay, Costas D Maranas

PLoS Comput Biol· September 2021

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MechFind: A computational framework for de novo prediction of enzyme mechanisms.
Austin D Hartley, Vikas Upadhyay, Veda Sheersh Boorla, Costas D Maranas

bioRxiv· September 2025

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novoStoic2.0: An integrated framework for pathway synthesis, thermodynamic evaluation, and enzyme selection.
Vikas Upadhyay, Mohit Anand, Costas D Maranas

PLoS Comput Biol· August 2025

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Efficacy of 20 min yoga module for reducing burnout among healthcare workers: protocol of randomised control trial and results of pilot study.
Vikas Upadhyay, Vartika Saxena, Apar Avinash Saoji, Monika Pathania, Bela Goyal

BMJ Open Sport Exerc Med· June 2025

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Combining Chemical Catalysis with Enzymatic Steps for the Synthesis of the Artemisinin Precursor Dihydroartemisinic Acid.
Vikas Upadhyay, Hongxiang Li, Jiachen He, Blake Edward Ocampo, Silas Cook

ACS Synth Biol· April 2025

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minChemBio: Expanding Chemical Synthesis with Chemo-Enzymatic Pathways Using Minimal Transitions.
Mohit Anand, Vikas Upadhyay, Costas D Maranas

ACS Synth Biol· March 2025

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Is Sphingosine Kinase 1 Associated with Hematological Malignancy? A Systematic Review and Meta-Analysis.
Sikha Morang, Surabhi Thapliyal, Vikas Upadhyay, Shalini Khichi, Mukesh Mamgain

Asian Pac J Cancer Prev· August 2024

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S1P Signaling Genes as Prominent Drivers of BCR-ABL1-Independent Imatinib Resistance and Six Herbal Compounds as Potential Drugs for Chronic Myeloid Leukemia.
Sikha Morang, Manisha Bisht, Vikas Upadhyay, Surabhi Thapliyal, Shailendra Handu

OMICS· July 2024

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Development and content validation of yoga module for the mental health of NICU mothers.
Twinkle Dogra, Kavita Khoiwal, Jaya Chaturvedi, Vikas Upadhyay, Suresh Lal Barnwal

Midwifery· January 2024

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Development and validation of 20-min yoga module for reducing burnout among healthcare worker(s).
Vikas Upadhyay, Apar Avinash Saoji, Anita Verma, Vartika Saxena

Complement Ther Clin Pract· February 2022

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Effect of Yoga Therapy on Health Outcomes in Women With Polycystic Ovary Syndrome: A Systematic Review and Meta-Analysis.
Anita Verma, Vikas Upadhyay, Vartika Saxena

Am J Lifestyle Med· August 2021

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Quality of Life in Yoga Experienced and Yoga Naïve Asian Indian Adults with Obesity.
Shirley Telles, Sachin Kumar Sharma, Alok Singh, Niranjan Kala, Vikas Upadhyay

J Obes· August 2020

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Statistical modeling of cell-to-cell variability in viral infection during passaging in suspension cell culture: Application in Monte-Carlo simulation.
Abha Saxena, Suryateja Ravutla, Vikas Upadhyay, Soumya Jana, David Murhammer

Biotechnol Bioeng· May 2020

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Cell-to-Cell Variability in Protein Expression during Viral Infection: Monte-Carlo Simulation and Validation based on Confocal Imaging.
Abha Saxena, Vikas Upadhyay, Vaibhav Dhyani, Soumya Jana, Lopamudra Giri

Annu Int Conf IEEE Eng Med Biol Soc· July 2019

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