Publications by authors named "Vincent Berry"

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Optimizing Guide Extension Catheter Advancement in Percutaneous Coronary Intervention: A Stepwise Approach Enhanced by Repeated Proximal to Distal Balloon Anchoring.
Hasan Kazma, Hussam Haidar, Vincent J Berry, Malek Mohammed, Abbas Rachid

Cureus· July 2025

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Insights into the evolution, virulence and speciation of and through multiomics analyses.
Pallavi Singh, Pratap Vydyam, Tiffany Fang, Karel Estrada, Luis Miguel Gonzalez, Vincent Berry

Emerg Microbes Infect· December 2024

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Multiomics analysis reveals MO1 as a distinct species and provides insights into its evolution and virulence.
Pallavi Singh, Pratap Vydyam, Tiffany Fang, Karel Estrada, Luis Miguel Gonzalez, Vincent Berry

bioRxiv· January 2024

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Using gamification to improve engagement and learning outcomes in medical microbiology: the case study of 'BacteriaGame'.
Nicolas Pineros, Katie Tenaillon, Julie Marin, Vincent Berry, Françoise Jaureguy

FEMS Microbiol Lett· January 2023

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On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D Santos, Wensheng Wang

PLoS Comput Biol· September 2021

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Midazolam sedation in palliative medicine: retrospective study in a French center for cancer control.
Vincent Gamblin, Vincent Berry, Emmanuelle Tresch-Bruneel, Michel Reich, Arlette Da Silva

BMC Palliat Care· June 2020

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Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana).
Mathieu Rouard, Gaetan Droc, Guillaume Martin, Julie Sardos, Yann Hueber, Vincent Berry

Genome Biol Evol· December 2018

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RecPhyloXML: a format for reconciled gene trees.
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S Bansal, Vincent Berry

Bioinformatics· November 2018

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A geography-aware reconciliation method to investigate diversification patterns in host/parasite interactions.
Vincent Berry, François Chevenet, Jean-Philippe Doyon, Emmanuelle Jousselin

Mol Ecol Resour· April 2018

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REGOSARC: Regorafenib versus placebo in doxorubicin-refractory soft-tissue sarcoma-A quality-adjusted time without symptoms of progression or toxicity analysis.
Vincent Berry, Laurent Basson, Emilie Bogart, Olivier Mir, Jean-Yves Blay

Cancer· June 2017

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Ancestral gene synteny reconstruction improves extant species scaffolding.
Yoann Anselmetti, Vincent Berry, Cedric Chauve, Annie Chateau, Eric Tannier

BMC Genomics· July 2016

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Inferring gene duplications, transfers and losses can be done in a discrete framework.
Vincent Ranwez, Celine Scornavacca, Jean-Philippe Doyon, Vincent Berry

J Math Biol· June 2016

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SylvX: a viewer for phylogenetic tree reconciliations.
François Chevenet, Jean-Philippe Doyon, Celine Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry

Bioinformatics· February 2016

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CompPhy: a web-based collaborative platform for comparing phylogenies.
Nicolas Fiorini, Vincent Lefort, François Chevenet, Vincent Berry, Anne-Muriel Arigon Chifolleau

BMC Evol Biol· December 2014

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Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods.
Thi-Hau Nguyen, Vincent Ranwez, Vincent Berry, Celine Scornavacca

PLoS One· July 2014

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Genetic structure and evolution of the Leishmania genus in Africa and Eurasia: what does MLSA tell us.
Fouad El Baidouri, Laure Diancourt, Vincent Berry, François Chevenet, Francine Pratlong

PLoS Negl Trop Dis· December 2013

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Reconciliation and local gene tree rearrangement can be of mutual profit.
Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry

Algorithms Mol Biol· April 2013

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Representing a set of reconciliations in a compact way.
Celine Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez

J Bioinform Comput Biol· April 2013

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Amalgamating source trees with different taxonomic levels.
Vincent Berry, Olaf R P Bininda-Emonds, Charles Semple

Syst Biol· March 2013

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Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti.
Emmanuel Cornillot, Kamel Hadj-Kaddour, Amina Dassouli, Benjamin Noel, Vincent Ranwez, Vincent Berry

Nucleic Acids Res· October 2012

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Quartets and unrooted phylogenetic networks.
Philippe Gambette, Vincent Berry, Christophe Paul

J Bioinform Comput Biol· August 2012

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Models, algorithms and programs for phylogeny reconciliation.
Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry

Brief Bioinform· September 2011

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Fixed-parameter tractability of the maximum agreement supertree problem.
Sylvain Guillemot, Vincent Berry

IEEE/ACM Trans Comput Biol Bioinform· August 2010

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ScripTree: scripting phylogenetic graphics.
François Chevenet, Olivier Croce, Maxime Hebrard, Richard Christen, Vincent Berry

Bioinformatics· April 2010

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Computing galled networks from real data.
Daniel H Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul

Bioinformatics· June 2009

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