Publications by authors named "Vivek Chandra"

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Crohn's Disease-associated variant in laccase domain containing 1 (LACC1) modulates T cell gene expression, metabolism and T cell function.
Yingcong Li, Gabriel Ascui, Martina Dicker, Thomas Riffelmacher, Vivek Chandra

Nat Commun· March 2025

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Long-term maintenance of patient-specific characteristics in tumoroids from six cancer indications.
Colin D Paul, Chris Yankaskas, Pradip Shahi Thakuri, Brittany Balhouse, Shyanne Salen, Vivek Chandra

Sci Rep· January 2025

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Distinct use of super-enhancer elements controls cell type-specific CD25 transcription and function.
Rosanne Spolski, Peng Li, Vivek Chandra, Boyoung Shin, Shubham Goel

Sci Immunol· November 2023

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JAML immunotherapy targets recently activated tumor-infiltrating CD8 T cells.
Simon Eschweiler, Alice Wang, Ciro Ramírez-Suástegui, Adrian von Witzleben, Yingcong Li, Vivek Chandra

Cell Rep· February 2023

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Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type-dependent effects of disease-risk variants.
Benjamin J Schmiedel, Cristian Gonzalez-Colin, Vicente Fajardo, Job Rocha, Ariel Madrigal, Vivek Chandra

Sci Immunol· February 2022

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COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types.
Benjamin J Schmiedel, Job Rocha, Cristian Gonzalez-Colin, Sourya Bhattacharyya, Ariel Madrigal, Vivek Chandra

Nat Commun· November 2021

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Promoter-interacting expression quantitative trait loci are enriched for functional genetic variants.
Vivek Chandra, Sourya Bhattacharyya, Benjamin J Schmiedel, Ariel Madrigal, Cristian Gonzalez-Colin

Nat Genet· January 2021

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COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types.
Benjamin J Schmiedel, Vivek Chandra, Job Rocha, Cristian Gonzalez-Colin, Sourya Bhattacharyya

bioRxiv· December 2020

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A Semiautomated ChIP-Seq Procedure for Large-scale Epigenetic Studies.
Justin Cayford, Sara Herrera-da la Mata, Benjamin Joachim Schmiedel, Vivek Chandra, Pandurangan Vijayanand

J Vis Exp· August 2020

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Plasma Cell Fate Is Orchestrated by Elaborate Changes in Genome Compartmentalization and Inter-chromosomal Hubs.
Alexandra Bortnick, Zhaoren He, Megan Aubrey, Vivek Chandra, Matthew Denholtz

Cell Rep· June 2020

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Plasma Cell Fate Is Orchestrated by Elaborate Changes in Genome Compartmentalization and Inter-chromosomal Hubs.
Alexandra Bortnick, Zhaoren He, Megan Aubrey, Vivek Chandra, Matthew Denholtz

Cell Rep· April 2020

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Identification of significant chromatin contacts from HiChIP data by FitHiChIP.
Sourya Bhattacharyya, Vivek Chandra, Pandurangan Vijayanand, Ferhat Ay

Nat Commun· September 2019

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The UPR Activator ATF6 Responds to Proteotoxic and Lipotoxic Stress by Distinct Mechanisms.
Arvin B Tam, Lindsay S Roberts, Vivek Chandra, Io Guane Rivera, Daniel K Nomura

Dev Cell· August 2018

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Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate.
Takeshi Isoda, Amanda J Moore, Zhaoren He, Vivek Chandra, Masatoshi Aida

Cell· September 2017

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Comprehensive characterization of neutrophil genome topology.
Yina Zhu, Ke Gong, Matthew Denholtz, Vivek Chandra, Mark P Kamps

Genes Dev· January 2017

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Id3 Orchestrates Germinal Center B Cell Development.
Shuwen Chen, Masaki Miyazaki, Vivek Chandra, Kathleen M Fisch, Aaron N Chang

Mol Cell Biol· October 2016

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AID targeting: old mysteries and new challenges.
Vivek Chandra, Alexandra Bortnick, Cornelis Murre

Trends Immunol· September 2015

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The E-Id protein axis modulates the activities of the PI3K-AKT-mTORC1-Hif1a and c-myc/p19Arf pathways to suppress innate variant TFH cell development, thymocyte expansion, and lymphomagenesis.
Masaki Miyazaki, Kazuko Miyazaki, Shuwen Chen, Vivek Chandra, Keisuke Wagatsuma

Genes Dev· February 2015

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Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate.
Yin C Lin, Christopher Benner, Robert Mansson, Sven Heinz, Kazuko Miyazaki, Vivek Chandra

Nat Immunol· December 2012

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The hepatitis E virus ORF3 protein regulates the expression of liver-specific genes by modulating localization of hepatocyte nuclear factor 4.
Vivek Chandra, Prasida Holla, Dhrubaa Ghosh, Debarshi Chakrabarti, Muralidhara Padigaru

PLoS One· December 2011

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The ORF3 protein of hepatitis E virus delays degradation of activated growth factor receptors by interacting with CIN85 and blocking formation of the Cbl-CIN85 complex.
Vivek Chandra, Manjula Kalia, Krishnan Hajela, Shahid Jameel

J Virol· April 2010

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Heparan sulfate proteoglycans are required for cellular binding of the hepatitis E virus ORF2 capsid protein and for viral infection.
Manjula Kalia, Vivek Chandra, Sheikh Abdul Rahman, Deepak Sehgal, Shahid Jameel

J Virol· December 2009

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The hepatitis E virus ORF3 protein stabilizes HIF-1alpha and enhances HIF-1-mediated transcriptional activity through p300/CBP.
Syed M Moin, Vivek Chandra, Rahul Arya, Shahid Jameel

Cell Microbiol· September 2009

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Molecular biology and pathogenesis of hepatitis E virus.
Vivek Chandra, Shikha Taneja, Manjula Kalia, Shahid Jameel

J Biosci· November 2008

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Hepatitis E virus genotype 1, Cuba.
María de la Caridad Montalvo Villalba, Licel de Los Angeles Rodríguez Lay, Vivek Chandra, Marité Bello Corredor, Susel Sariego Frometa

Emerg Infect Dis· August 2008

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