Publications by authors named "Vivek Krishnakumar"

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JCVI: A versatile toolkit for comparative genomics analysis.
Haibao Tang, Vivek Krishnakumar, Xiaofei Zeng, Zhougeng Xu, Adam Taranto

Imeta· August 2024

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An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
Alexander Sullivan, Priyank K Purohit, Nowlan H Freese, Asher Pasha, Eddi Esteban, Vivek Krishnakumar

Plant J· November 2019

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Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena.
Jie Xiong, Wentao Yang, Kai Chen, Chuanqi Jiang, Yang Ma, Vivek Krishnakumar

PLoS Biol· June 2019

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ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.
Jamie Waese, Jim Fan, Asher Pasha, Hans Yu, Geoffrey Fucile, Vivek Krishnakumar

Plant Cell· August 2017

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Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Chia-Yi Cheng, Vivek Krishnakumar, Agnes P Chan, Françoise Thibaud-Nissen, Seth Schobel

Plant J· February 2017

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ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery.
Vivek Krishnakumar, Sergio Contrino, Chia-Yi Cheng, Irina Belyaeva, Erik S Ferlanti

Plant Cell Physiol· January 2017

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Structure of the germline genome of and relationship to the massively rearranged somatic genome.
Eileen P Hamilton, Aurélie Kapusta, Piroska E Huvos, Shelby L Bidwell, Nikhat Zafar, Vivek Krishnakumar

Elife· November 2016

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Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome.
Xingtan Zhang, Benjamin D Rosen, Haibao Tang, Vivek Krishnakumar, Christopher D Town

PLoS One· January 2016

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MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.
Srikar Chamala, Nicolás García, Grant T Godden, Vivek Krishnakumar, Ingrid E Jordon-Thaden

Appl Plant Sci· April 2015

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Araport: the Arabidopsis information portal.
Vivek Krishnakumar, Matthew R Hanlon, Sergio Contrino, Erik S Ferlanti, Svetlana Karamycheva

Nucleic Acids Res· January 2015

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MTGD: The Medicago truncatula genome database.
Vivek Krishnakumar, Maria Kim, Benjamin D Rosen, Svetlana Karamycheva, Shelby L Bidwell

Plant Cell Physiol· January 2015

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A maize database resource that captures tissue-specific and subcellular-localized gene expression, via fluorescent tags and confocal imaging (Maize Cell Genomics Database).
Vivek Krishnakumar, Yongwook Choi, Erin Beck, Qingyu Wu, Anding Luo

Plant Cell Physiol· January 2015

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Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.
Isobel A P Parkin, Chushin Koh, Haibao Tang, Stephen J Robinson, Sateesh Kagale, Vivek Krishnakumar

Genome Biol· June 2014

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An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
Haibao Tang, Vivek Krishnakumar, Shelby Bidwell, Benjamin Rosen, Agnes Chan

BMC Genomics· April 2014

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The Medicago genome provides insight into the evolution of rhizobial symbioses.
Nevin D Young, Frédéric Debellé, Giles E D Oldroyd, Rene Geurts, Steven B Cannon, Vivek Krishnakumar

Nature· November 2011

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A web-based software system for dynamic gene cluster comparison across multiple genomes.
Kashi Vishwanath Revanna, Vivek Krishnakumar, Qunfeng Dong

Bioinformatics· April 2009

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