Publications by authors named "Vladimir A Kuznetsov"

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Editorial: Mathematical modeling and computational predictions in oncoimmunology.
Vladimir A Kuznetsov, Heiko Enderling, Mark Chaplain

Front Immunol· June 2024

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KDM7A-DT induces genotoxic stress, tumorigenesis, and progression of p53 missense mutation-associated invasive breast cancer.
Antonis Giannakakis, Margaritis Tsifintaris, Vasileios Gouzouasis, Ghim Siong Ow, Mei Yee Aau, Vladimir A Kuznetsov

Front Oncol· May 2024

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Dataset of bulged G-quadruplex forming sequences in the human genome.
Csaba Papp, Piroon Jenjaroenpun, Vineeth T Mukundan, Anh Tuân Phan, Vladimir A Kuznetsov

Data Brief· October 2023

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Stable bulged G-quadruplexes in the human genome: identification, experimental validation and functionalization.
Csaba Papp, Vineeth T Mukundan, Piroon Jenjaroenpun, Fernaldo Richtia Winnerdy, Ghim Siong Ow, Vladimir A Kuznetsov

Nucleic Acids Res· May 2023

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A Double Jeopardy: Loss of FMRP Results in DSB and Down-regulated DNA Repair.
Arijita Chakraborty, Andre Grageda, Vladimir A Kuznetsov, Wenyi Feng

21 Century Pathol· October 2022

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ABI1-based expression signature predicts breast cancer metastasis and survival.
Angelina Regua, Csaba Papp, Andre Grageda, Baylee A Porter, Tiffany Caza, Vladimir A Kuznetsov

Mol Oncol· July 2022

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Identification of Recurrent Chromosome Breaks Underlying Structural Rearrangements in Mammary Cancer Cell Lines.
Natalie C Senter, Andrew McCulley, Vladimir A Kuznetsov, Wenyi Feng

Genes (Basel)· July 2022

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A Tale of Loops and Tails: The Role of Intrinsically Disordered Protein Regions in R-Loop Recognition and Phase Separation.
Leonardo G Dettori, Diego Torrejon, Arijita Chakraborty, Arijit Dutta, Mohamed Mohamed, Vladimir A Kuznetsov

Front Mol Biosci· June 2021

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Immunity Depletion, Telomere Imbalance, and Cancer-Associated Metabolism Pathway Aberrations in Intestinal Mucosa upon Short-Term Caloric Restriction.
Evan Maestri, Kalina Duszka, Vladimir A Kuznetsov

Cancers (Basel)· June 2021

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Replication stress induces global chromosome breakage in the fragile X genome.
Arijita Chakraborty, Piroon Jenjaroenpun, Jing Li, Sami El Hilali, Andrew McCulley, Vladimir A Kuznetsov

Cell Rep· March 2021

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Clomiphene citrate improved testosterone and sperm concentration in hypogonadal males.
Ava Delu, Robert J Kiltz, Vladimir A Kuznetsov, J C Trussell

Syst Biol Reprod Med· December 2020

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Replication Stress Induces Global Chromosome Breakage in the Fragile X Genome.
Arijita Chakraborty, Piroon Jenjaroenpun, Jing Li, Sami El Hilali, Andrew McCulley, Vladimir A Kuznetsov

Cell Rep· September 2020

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Defining hypogonadism in male partners of couples with unexplained infertility.
J C Trussell, Ava Delu, Robert J Kiltz, Vladimir A Kuznetsov

Can J Urol· August 2020

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Abi1 loss drives prostate tumorigenesis through activation of EMT and non-canonical WNT signaling.
Disharee Nath, Xiang Li, Claudia Mondragon, Dawn Post, Ming Chen, Vladimir A Kuznetsov

Cell Commun Signal· September 2019

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Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
Vladimir A Kuznetsov, Vladyslav Bondarenko, Thidathip Wongsurawat, Surya P Yenamandra, Piroon Jenjaroenpun

Nucleic Acids Res· September 2018

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Toward predictive R-loop computational biology: genome-scale prediction of R-loops reveals their association with complex promoter structures, G-quadruplexes and transcriptionally active enhancers.
Vladimir A Kuznetsov, Vladyslav Bondarenko, Thidathip Wongsurawat, Surya P Yenamandra, Piroon Jenjaroenpun

Nucleic Acids Res· September 2018

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Gene expression profile analysis of aortic vascular smooth muscle cells reveals upregulation of cadherin genes in myocardial infarction patients.
Anselm A Derda, Chin Cheng Woo, Thidathip Wongsurawat, Mark Richards, Chuen Neng Lee, Vladimir A Kuznetsov

Physiol Genomics· August 2018

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Complementary intestinal mucosa and microbiota responses to caloric restriction.
Kalina Duszka, Sandrine Ellero-Simatos, Ghim Siong Ow, Marianne Defernez, Eeswari Paramalingam, Vladimir A Kuznetsov

Sci Rep· July 2018

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Mathematical Modeling of Avidity Distribution and Estimating General Binding Properties of Transcription Factors from Genome-Wide Binding Profiles.
Vladimir A Kuznetsov

Methods Mol Biol· May 2018

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Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction.
Thidathip Wongsurawat, Chin Cheng Woo, Antonis Giannakakis, Xiao Yun Lin, Esther Sok Hwee Cheow, Vladimir A Kuznetsov

Atherosclerosis· April 2018

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Transcriptome alterations of vascular smooth muscle cells in aortic wall of myocardial infarction patients.
Thidathip Wongsurawat, Chin Cheng Woo, Antonis Giannakakis, Xiao Yun Lin, Esther Sok Hwee Cheow, Vladimir A Kuznetsov

Data Brief· April 2018

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Plasma Ceramides as Prognostic Biomarkers and Their Arterial and Myocardial Tissue Correlates in Acute Myocardial Infarction.
Leonardo P de Carvalho, Sock Hwee Tan, Ghim-Siong Ow, Zhiqun Tang, Jianhong Ching, Vladimir A Kuznetsov

JACC Basic Transl Sci· April 2018

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Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons.
Jiaxu Wang, Piroon Jenjaroenpun, Akshay Bhinge, Vladimir Espinosa Angarica, Antonio Del Sol, Vladimir A Kuznetsov

Genome Res· November 2017

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Identification of common oncogenic and early developmental pathways in the ovarian carcinomas controlling by distinct prognostically significant microRNA subsets.
Vladimir A Kuznetsov, Zhiqun Tang, Anna V Ivshina

BMC Genomics· October 2017

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Benchmarking selected computational gene network growing tools in context of virus-host interactions.
Biruhalem Taye, Candida Vaz, Vivek Tanavde, Vladimir A Kuznetsov, Frank Eisenhaber

Sci Rep· July 2017

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