Publications by authors named "Willy Wriggers"

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Decoys Reveal Multiple Basins of Attraction for Cryo-Electron-Microscopy Flexible Fitting.
Maytha Alshammari, Jing He, Willy Wriggers

Comput Struct Bioinform (2024)· March 2025

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Toward Modeling Protein Multimers by Combining AlphaFold 3 Predictions with Secondary Structures from Medium-Resolution Cryo-EM Maps.
Changrui Li, Thu Nguyen, Willy Wriggers, Jing He

Comput Struct Bioinform (2024)· March 2025

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ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion.
Willy Wriggers, Maytha Alshammari, Joseph N Stember, Sebastian Stolzenberg, Essam Metwally

J Phys Chem B· January 2025

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The combined focal loss and dice loss function improves the segmentation of beta-sheets in medium-resolution cryo-electron-microscopy density maps.
Yongcheng Mu, Thu Nguyen, Bryan Hawickhorst, Willy Wriggers, Jiangwen Sun

Bioinform Adv· November 2024

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Flexible fitting of AlphaFold2-predicted models to cryo-EM density maps using elastic network models: a methodical affirmation.
Maytha Alshammari, Jing He, Willy Wriggers

Bioinform Adv· November 2024

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Untangling Irregular Actin Cytoskeleton Architectures in Tomograms of the Cell with .
Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers

Int J Mol Sci· December 2023

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Tracing Randomly Oriented Filaments in a Simulated Actin Network Tomogram.
Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2022

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Refinement of AlphaFold2 Models against Experimental Cryo-EM Density Maps at 4-6Å Resolution.
Maytha Alshammari, Jing He, Willy Wriggers

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2022

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Refinement of AlphaFold2 models against experimental and hybrid cryo-EM density maps.
Maytha Alshammari, Willy Wriggers, Jiangwen Sun, Jing He

QRB Discov· September 2022

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Spaghetti Tracer: A Framework for Tracing Semiregular Filamentous Densities in 3D Tomograms.
Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers

Biomolecules· July 2022

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: Simulation of Filamentous Cryo-Electron Tomograms.
Peter Scheible, Salim Sazzed, Jing He, Willy Wriggers

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2021

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Tracing Filaments in Simulated 3D Cryo-Electron Tomography Maps Using a Fast Dynamic Programming Algorithm.
Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2021

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Mechanism for the Unfolding of the TOP7 Protein in Steered Molecular Dynamics Simulations as Revealed by Mutual Information Analysis.
Ognjen Perišić, Willy Wriggers

Front Mol Biosci· September 2021

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Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution.
Julio Kovacs, Junha Song, Manfred Auer, Jing He, Wade Hunter, Willy Wriggers

J Chem Inf Model· May 2020

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Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps.
Salim Sazzed, Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He

J Chem Inf Model· May 2020

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Faces of Contemporary CryoEM Information and Modeling.
Giulia Palermo, Yuji Sugita, Willy Wriggers, Rommie E Amaro

J Chem Inf Model· May 2020

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A cryo-tomography-based volumetric model of the actin core of mouse vestibular hair cell stereocilia lacking plastin 1.
Junha Song, Roma Patterson, Zoltan Metlagel, Jocelyn F Krey, Samantha Hao, Willy Wriggers

J Struct Biol· April 2020

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Frontiers in CryoEM Modeling.
Giulia Palermo, Yuji Sugita, Willy Wriggers, Rommie E Amaro

J Chem Inf Model· July 2019

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Accurate flexible refinement of atomic models against medium-resolution cryo-EM maps using damped dynamics.
Julio A Kovacs, Vitold E Galkin, Willy Wriggers

BMC Struct Biol· September 2018

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A Pattern Recognition Tool for Medium-resolution Cryo-EM Density Maps and Low-resolution Cryo-ET Density maps.
Devin Haslam, Salim Sazzed, Willy Wriggers, Julio Kovcas, Junha Song

Bioinform Res Appl (2018)· June 2018

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Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia.
Salim Sazzed, Junha Song, Julio A Kovacs, Willy Wriggers, Manfred Auer

Molecules· April 2018

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Computing Spatiotemporal Heat Maps of Lipid Electropore Formation: A Statistical Approach.
Willy Wriggers, Federica Castellani, Julio A Kovacs, P Thomas Vernier

Front Mol Biosci· April 2017

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A Balanced Approach to Adaptive Probability Density Estimation.
Julio A Kovacs, Cailee Helmick, Willy Wriggers

Front Mol Biosci· April 2017

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Comparing an Atomic Model or Structure to a Corresponding Cryo-electron Microscopy Image at the Central Axis of a Helix.
Stephanie Zeil, Julio Kovacs, Willy Wriggers, Jing He

J Comput Biol· January 2017

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Comparison of an Atomic Model and Its Cryo-EM Image at the Central Axis of a Helix.
Jing He, Stephanie Zeil, Hussam Hallak, Kele McKaig, Julio Kovacs, Willy Wriggers

Proceedings (IEEE Int Conf Bioinformatics Biomed)· November 2015

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