Publications by authors named "WingKin Sung"

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UniVar: A variant interpretation platform enhancing rare disease diagnosis through robust filtering and unified analysis of SNV, INDEL, CNV and SV.
Cherie C Y Au-Yeung, Yuen-Ting Cheung, Joshua Y T Cheng, Ken W H Ip, Sau-Dan Lee, Wing-Kin Sung

Comput Biol Med· February 2025

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The haplotype-resolved T2T genome for Bauhinia × blakeana sheds light on the genetic basis of flower heterosis.
Weixue Mu, Joshua Casey Darian, Wing-Kin Sung, Xing Guo, Tuo Yang

Gigascience· January 2025

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SurVIndel2: improving copy number variant calling from next-generation sequencing using hidden split reads.
Ramesh Rajaby, Wing-Kin Sung

Nat Commun· December 2024

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Constructing telomere-to-telomere diploid genome by polishing haploid nanopore-based assembly.
Joshua Casey Darian, Ritu Kundu, Ramesh Rajaby, Wing-Kin Sung

Nat Methods· April 2024

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Three-dimensional chromatin analysis reveals Sp1 as a mediator to program and reprogram HPV-host epigenetic architecture in cervical cancer.
Canhui Cao, Qian Xu, Zhixian Zhu, Miaochun Xu, Ye Wei, WingKin Sung

Cancer Lett· April 2024

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PlantCFG: A comprehensive database with web tools for analyzing candidate flowering genes in multiple plants.
Dongxu Liu, Jiawei Li, Shengbo Wang, Tingting Huang, Fangting Tao, Wing-Kin Sung

Plant Commun· February 2024

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Integrated 3D genome, epigenome and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice.
Ying Zhang, Guoting Chen, Li Deng, Baibai Gao, Jing Yang, Wing-Kin Sung

Nucleic Acids Res· September 2023

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Distribution based MIL pooling filters: Experiments on a lymph node metastases dataset.
Mustafa Umit Oner, Jared Marc Song Kye-Jet, Hwee Kuan Lee, Wing-Kin Sung

Med Image Anal· July 2023

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INSurVeyor: improving insertion calling from short read sequencing data.
Ramesh Rajaby, Dong-Xu Liu, Chun Hang Au, Yuen-Ting Cheung, Amy Yuet Ting Lau, Wing-Kin Sung

Nat Commun· June 2023

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SVsearcher: A more accurate structural variation detection method in long read data.
Yan Zheng, Xuequn Shang, Wing-Kin Sung

Comput Biol Med· May 2023

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An AI-assisted tool for efficient prostate cancer diagnosis in low-grade and low-volume cases.
Mustafa Umit Oner, Mei Ying Ng, Danilo Medina Giron, Cecilia Ee Chen Xi, Louis Ang Yuan Xiang, Wing-Kin Sung

Patterns (N Y)· December 2022

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Parafibromin governs cell polarity and centrosome assembly in Drosophila neural stem cells.
Qiannan Deng, Cheng Wang, Chwee Tat Koe, Jan Peter Heinen, Ye Sing Tan, Wing-Kin Sung

PLoS Biol· October 2022

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Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim 'Agnes' reveals metabolic pathways regulating floral traits.
Abner Herbert Lim, Zhen Jie Low, Prashant Narendra Shingate, Jing Han Hong, Shu Chen Chong, Wing-Kin Ken Sung

Commun Biol· September 2022

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Drug repositioning for esophageal squamous cell carcinoma.
Adam N Bennett, Rui Xuan Huang, Qian He, Nikki P Lee, Wing-Kin Sung

Front Genet· September 2022

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Deep Learning-Based Segmentation of Peach Diseases Using Convolutional Neural Network.
Na Yao, Fuchuan Ni, Minghao Wu, Haiyan Wang, Guoliang Li, Wing-Kin Sung

Front Plant Sci· May 2022

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Obtaining spatially resolved tumor purity maps using deep multiple instance learning in a pan-cancer study.
Mustafa Umit Oner, Jianbin Chen, Egor Revkov, Anne James, Seow Ye Heng, Wing-Kin Sung

Patterns (N Y)· February 2022

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Oner, Sung, and Lee: Researchers in digital pathology for the future of modern medicine.
Mustafa Umit Oner, Wing-Kin Sung, Hwee Kuan Lee

Patterns (N Y)· February 2022

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ASMdb: a comprehensive database for allele-specific DNA methylation in diverse organisms.
Qiangwei Zhou, Pengpeng Guan, Zhixian Zhu, Sheng Cheng, Cong Zhou, Wing-Kin Sung

Nucleic Acids Res· January 2022

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Single-cell analysis reveals androgen receptor regulates the ER-to-Golgi trafficking pathway with CREB3L2 to drive prostate cancer progression.
Lingling Hu, Xin Chen, Nitin Narwade, Michelle Gek Liang Lim, Zikai Chen, Wing-Kin Sung

Oncogene· November 2021

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Calling large indels in 1047 Arabidopsis with IndelEnsembler.
Dong-Xu Liu, Ramesh Rajaby, Lu-Lu Wei, Lei Zhang, Zhi-Quan Yang, Wing-Kin Sung

Nucleic Acids Res· November 2021

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RiceENCODE: A comprehensive epigenomic database as a rice Encyclopedia of DNA Elements.
Liang Xie, Minghao Liu, Lun Zhao, Kai Cao, Peng Wang, Wing-Kin Sung

Mol Plant· October 2021

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A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses.
Fan Jiang, Yaoxin Jiang, Wenxuan Wang, Changyi Xiao, Ruiyi Lin, Wing-Kin Sung

BMC Genomics· July 2021

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Histone lysine methyltransferase Pr-set7/SETD8 promotes neural stem cell reactivation.
Jiawen Huang, Mahekta R Gujar, Qiannan Deng, Sook Y Chia, Song Li, Wing-Kin Sung

EMBO Rep· April 2021

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L2MXception: an improved Xception network for classification of peach diseases.
Na Yao, Fuchuan Ni, Ziyan Wang, Jun Luo, Wing-Kin Sung

Plant Methods· April 2021

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Analysis of whole-genome re-sequencing data of ducks reveals a diverse demographic history and extensive gene flow between Southeast/South Asian and Chinese populations.
Fan Jiang, Ruiyi Lin, Changyi Xiao, Tanghui Xie, Yaoxin Jiang, Wing-Kin Sung

Genet Sel Evol· April 2021

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