Publications by authors named "Wu Cathy"

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KSMoFinder-knowledge graph embedding of proteins and motifs for predicting kinases of human phosphosites.
Manju Anandakrishnan, Karen E Ross, Chuming Chen, K Vijay-Shanker, Cathy H Wu

Bioinform Adv· December 2025

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KSMoFinder - Knowledge graph embedding of proteins and motifs for predicting kinases of human phosphosites.
Manju Anandakrishnan, Karen E Ross, Chuming Chen, K Vijay-Shanker, Cathy H Wu

bioRxiv· October 2025

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Predicting Behavioral Determinants of Health from Clinical Text Using Transformer Models and BiLSTM.
Saad Althabiti, Chuming Chen, Cathy Wu, Vijay Shanker

medRxiv· October 2025

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Desiderata for a biomedical knowledge network: opportunities, challenges and future Directions.
Chunlei Wu, Hongfang Liu, Jason Flannick, Mark A Musen, Andrew I Su, Cathy H Wu

ArXiv· September 2025

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Matching-Adjusted Indirect Comparison of Daratumumab-Pomalidomide-Dexamethasone and Pomalidomide-Bortezomib-Dexamethasone in Relapsed/Refractory Multiple Myeloma.
Wee Joo Chng, David Bin-Chia Wu, Cathy Kwang-Wei Wu, Aaron Springford, Caitlin H Daly

Clin Lymphoma Myeloma Leuk· July 2025

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Boosting Social Determinants of Health Extraction with Semantic Knowledge Augmented Large Language Model.
Lei Gong, Jaren Bresnick, Aidong Zhang, Cathy Wu, Kishlay Jha

AMIA Annu Symp Proc· May 2025

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Revisiting the correlation between simulated and field-observed conflicts using large-scale traffic reconstruction.
Ao Qu, Cathy Wu

Accid Anal Prev· February 2025

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InterPro: the protein sequence classification resource in 2025.
Matthias Blum, Antonina Andreeva, Laise Cavalcanti Florentino, Sara Rocio Chuguransky, Tiago Grego, Cathy H Wu

Nucleic Acids Res· January 2025

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KSFinder-a knowledge graph model for link prediction of novel phosphorylated substrates of kinases.
Manju Anandakrishnan, Karen E Ross, Chuming Chen, Vijay Shanker, Julie Cowart, Cathy H Wu

PeerJ· October 2023

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Text mining of CHO bioprocess bibliome: Topic modeling and document classification.
Qinghua Wang, Jonathan Olshin, K Vijay-Shanker, Cathy H Wu

PLoS One· April 2023

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Association of Area Deprivation With Primary Hypertension Diagnosis Among Youth Medicaid Recipients in Delaware.
Carissa M Baker-Smith, Wei Yang, Mary J McDuffie, Erin P Nescott, Bethany J Wolf, Cathy H Wu

JAMA Netw Open· March 2023

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InterPro in 2022.
Typhaine Paysan-Lafosse, Matthias Blum, Sara Chuguransky, Tiago Grego, Beatriz Lázaro Pinto, Cathy H Wu

Nucleic Acids Res· January 2023

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Microevolutionary dynamics of eccDNA in Chinese hamster ovary cells grown in fed-batch cultures under control and lactate-stressed conditions.
Dylan G Chitwood, Qinghua Wang, Stephanie R Klaubert, Kiana Green, Cathy H Wu

Sci Rep· January 2023

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A knowledge graph representation learning approach to predict novel kinase-substrate interactions.
Sachin Gavali, Karen Ross, Chuming Chen, Julie Cowart, Cathy H Wu

Mol Omics· October 2022

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iPTMnet RESTful API for Post-translational Modification Network Analysis.
Sachin Gavali, Karen E Ross, Julie Cowart, Chuming Chen, Cathy H Wu

Methods Mol Biol· June 2022

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Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses.
Rita K Hayford, Desalegn D Serba, Shaojun Xie, Vasudevan Ayyappan, Jyothi Thimmapuram, Cathy H Wu

BMC Plant Biol· March 2022

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COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.
Chuming Chen, Karen E Ross, Sachin Gavali, Julie E Cowart, Cathy H Wu

Bioinformatics· December 2021

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A crowdsourcing open platform for literature curation in UniProt.
Yuqi Wang, Qinghua Wang, Hongzhan Huang, Wei Huang, Yongxing Chen, Cathy H Wu

PLoS Biol· December 2021

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TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis.
Karen Ross, Alessandro M Varani, Erik Snesrud, Hongzhan Huang, Danillo Oliveira Alvarenga, Cathy Wu

mBio· October 2021

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Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance.
Xu Zhang, Tapan K Maity, Karen E Ross, Yue Qi, Constance M Cultraro, Cathy Wu

Cancer Res· June 2021

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The InterPro protein families and domains database: 20 years on.
Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasaamy, Cathy H Wu

Nucleic Acids Res· January 2021

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Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch cultures.
Dylan G Chitwood, Qinghua Wang, Kathryn Elliott, Aiyana Bullock, Dwon Jordana, Cathy Wu

BMC Biotechnol· January 2021

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Protein ontology on the semantic web for knowledge discovery.
Chuming Chen, Hongzhan Huang, Karen E Ross, Julie E Cowart, Cecilia N Arighi, Cathy H Wu

Sci Data· October 2020

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Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence.
Elisa M Ovadia, Lina Pradhan, Lisa A Sawicki, Julie E Cowart, Rebecca E Huber, Cathy H Wu

Adv Biosyst· September 2020

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piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Najafabadi, Wen Niu, Cathy Wu

Nucleic Acids Res· July 2020

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