Publications by authors named "Xiaoli Fern"

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Learning a deep language model for microbiomes: The power of large scale unlabeled microbiome data.
Quintin Pope, Rohan Varma, Christine Tataru, Maude M David, Xiaoli Fern

PLoS Comput Biol· May 2025

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Identification of biological signatures of cruciferous vegetable consumption utilizing machine learning-based global untargeted stable isotope traced metabolomics.
John A Bouranis, Yijie Ren, Laura M Beaver, Jaewoo Choi, Carmen P Wong, Xiaoli Z Fern

Front Nutr· July 2024

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Classifying the toxicity of pesticides to honey bees via support vector machines with random walk graph kernels.
Ping Yang, E Adrian Henle, Xiaoli Z Fern, Cory M Simon

J Chem Phys· July 2022

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PoreMatMod.jl: Julia Package for Postsynthetic Modification of Crystal Structure Models.
E Adrian Henle, Nickolas Gantzler, Praveen K Thallapally, Xiaoli Z Fern, Cory M Simon

J Chem Inf Model· February 2022

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Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning.
Maude M David, Christine Tataru, Quintin Pope, Lydia J Baker, Mary K English, Xiaoli Z Fern

mSystems· February 2022

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Non-injective gas sensor arrays: identifying undetectable composition changes.
Nickolas Gantzler, E Adrian Henle, Praveen K Thallapally, Xiaoli Z Fern, Cory M Simon

J Phys Condens Matter· September 2021

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Modeling Infant Free Play Using Hidden Markov Models.
Hoang Le, Justine E Hoch, Ori Ossmy, Karen E Adolph, Xiaoli Fern, Alan Fern

IEEE Int Conf Dev Learn (2021)· August 2021

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A Novel Attribute-Based Symmetric Multiple Instance Learning for Histopathological Image Analysis.
Trung Vu, Phung Lai, Raviv Raich, Anh Pham, Xiaoli Z Fern

IEEE Trans Med Imaging· October 2020

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Heterogeneous Exposure Associations in Observational Cohort Studies: The Example of Blood Pressure in Older Adults.
Michelle C Odden, Andreea M Rawlings, Abtin Khodadadi, Xiaoli Fern, Michael G Shlipak

Am J Epidemiol· January 2020

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Dynamic Programming for Instance Annotation in Multi-Instance Multi-Label Learning.
Anh T Pham, Raviv Raich, Xiaoli Z Fern

IEEE Trans Pattern Anal Mach Intell· December 2017

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Acoustic classification of multiple simultaneous bird species: a multi-instance multi-label approach.
Forrest Briggs, Balaji Lakshminarayanan, Lawrence Neal, Xiaoli Z Fern, Raviv Raich

J Acoust Soc Am· June 2012

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Optimization of pH and nitrogen for enhanced hydrogen production by Synechocystis sp. PCC 6803 via statistical and machine learning methods.
Elizabeth H Burrows, Weng-Keen Wong, Xiaoli Fern, Frank W R Chaplen, Roger L Ely

Biotechnol Prog· December 2009

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