Publications by authors named "Xingcheng Lin"

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A
Active regulation of the epidermal growth factor receptor by the membrane bilayer.
Shwetha Srinivasan, Xingcheng Lin, Xuyan Chen, Raju Regmi, Bin Zhang

bioRxiv· November 2025

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Nucleosome condensate and linker DNA alter chromatin folding pathways and rates.
Yunrui Qiu, Shuming Liu, Xingcheng Lin, Ilona Christy Unarta, Xuhui Huang

Biophys J· November 2025

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Interpretable protein-DNA interactions captured by structure-sequence optimization.
Yafan Zhang, Irene Silvernail, Zhuyang Lin, Xingcheng Lin

Elife· July 2025

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C
Characterizing DNA recognition preferences of transcription factors using global couplings and high-throughput sequencing.
Qin Zhou, Jose Alberto de la Paz, Alexander D Stanowick, Xingcheng Lin, Faruck Morcos

Nucleic Acids Res· June 2025

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B
Biophysical modeling for accurate T cell specificity prediction of viral and tumor antigens.
Zahra S Ghoreyshi, Noah Tubo, Luca Zammataro, Xizeng Mao, Ho Ngai, Xingcheng Lin

bioRxiv· May 2025

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C
Connected Chromatin Amplifies Acetylation-Modulated Nucleosome Interactions.
Rina Li, Xingcheng Lin

Biochemistry· March 2025

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PANoptosis-related genes in the prognosis and immune landscape of hepatocellular carcinoma.
Xiaowu Wang, Liangchen Qu, Zhikai Wen, Zhixuan Wu, Yuxiang Xue, Xingcheng Lin

Immunol Res· February 2025

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H
Harmine inhibits the proliferation and migration and promotes the apoptosis of colon cancer cells via inhibition of the FAK/AKT and ERK/CREB signaling pathways.
Fu-Hong Liu, Xing-Cheng Lin, Yu-Wei Liu, Tian-Tian Zhang, Yang-Bo Zhang

J Asian Nat Prod Res· January 2025

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Nucleosome condensate and linker DNA alter chromatin folding pathways and rates.
Yunrui Qiu, Shuming Liu, Lin Xingcheng, Ilona Christy Unarta, Xuhui Huang

bioRxiv· November 2024

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R
RACER-m leverages structural features for sparse T cell specificity prediction.
Ailun Wang, Xingcheng Lin, Kevin Ng Chau, José N Onuchic, Herbert Levine

Sci Adv· May 2024

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R
Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies.
Mayu Shibata, Xingcheng Lin, José N Onuchic, Kei Yura, Ryan R Cheng

Biophys J· March 2024

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E
Explicit ion modeling predicts physicochemical interactions for chromatin organization.
Xingcheng Lin, Bin Zhang

Elife· January 2024

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C
Cucurbitacin E inhibits the proliferation of glioblastoma cells via FAK/AKT/GSK3β pathway.
Wen Chen, Fuhong Liu, Xingcheng Lin, Lehui Li, Wenting Chen

Oncol Rep· December 2023

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β‑adrenergic receptor activation promotes the proliferation of HepG2 cells via the ERK1/2/CREB pathways.
Xingcheng Lin, Jingjing He, Fuhong Liu, Lehui Li, Longhua Sun, Haolin Xi

Oncol Lett· December 2023

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Explicit Ion Modeling Predicts Physicochemical Interactions for Chromatin Organization.
Xingcheng Lin, Bin Zhang

bioRxiv· November 2023

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H
Harmine exerts anxiolytic effects by regulating neuroinflammation and neuronal plasticity in the basolateral amygdala.
Zhi-Heng Zheng, Xing-Cheng Lin, Ying Lu, Shi-Rui Cao, Xu-Kai Liu, Dong Lin

Int Immunopharmacol· June 2023

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C
Chromatin fiber breaks into clutches under tension and crowding.
Shuming Liu, Xingcheng Lin, Bin Zhang

Nucleic Acids Res· September 2022

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L
Ligand-induced transmembrane conformational coupling in monomeric EGFR.
Shwetha Srinivasan, Raju Regmi, Xingcheng Lin, Courtney A Dreyer, Xuyan Chen

Nat Commun· July 2022

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C
Contact map dependence of a T-cell receptor binding repertoire.
Kevin Ng Chau, Jason T George, José N Onuchic, Xingcheng Lin, Herbert Levine

Phys Rev E· July 2022

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LncRNA ASB16-AS1 drives proliferation, migration, and invasion of colorectal cancer cells through regulating miR-185-5p/TEAD1 axis.
Mingxu Yu, Changsheng Shi, Dingyin Xu, Xingcheng Lin, Tingting Ji

Cell Cycle· January 2022

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M
Multiscale modeling of genome organization with maximum entropy optimization.
Xingcheng Lin, Yifeng Qi, Andrew P Latham, Bin Zhang

J Chem Phys· July 2021

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C
Cooperative DNA looping by PRC2 complexes.
Xingcheng Lin, Rachel Leicher, Shixin Liu, Bin Zhang

Nucleic Acids Res· June 2021

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E
Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms.
Antonio B Oliveira Junior, Xingcheng Lin, Prakash Kulkarni, José N Onuchic, Susmita Roy

J Chem Theory Comput· May 2021

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R
Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire.
Xingcheng Lin, Jason T George, Nicholas P Schafer, Kevin Ng Chau, Michael E Birnbaum

Nat Comput Sci· May 2021

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S
Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface.
Xinqiang Ding, Xingcheng Lin, Bin Zhang

Nat Commun· February 2021

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