Publications by authors named "Xiting Yan"

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A deep generative model for deciphering cellular dynamics and in silico drug discovery in complex diseases.
Yumin Zheng, Jonas C Schupp, Taylor Adams, Geremy Clair, Aurelien Justet, Xiting Yan

Nat Biomed Eng· December 2025

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Sex-biased Gene Expression Underlies Immune Dysfunction in Asthma.
Shannon Kay, Haseena Rajeevan, Moeun Son, Jason Kwah, Maria Ramirez, Xiting Yan

Am J Respir Cell Mol Biol· December 2025

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Integrative single-cell RNA and ATAC sequencing reveals the impact of chronic cigarette smoking on lung epithelial responses to influenza and hyperoxia.
Pei-Chun Cha, Zhenyang Zou, Jessica Nouws, Reginald M Brewster, Charles S Dela Cruz, Xiting Yan

Respir Res· December 2025

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Proximal Pulmonary Artery Stiffening as a Biomarker of Cardiopulmonary Aging.
Ruben De Man, Zhongyu Cai, Pramath Doddaballapur, Nicole Guerrera, Liqin Lin, Xiting Yan

bioRxiv· June 2025

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Alveolar epithelial cell plasticity and injury memory in human pulmonary fibrosis.
Taylor S Adams, Jonas C Schupp, Agshin Balayev, Johad Khoury, Aurélien Justet, Xiting Yan

bioRxiv· June 2025

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Single-cell RNA Sequencing Analysis of Sputum Cell Transcriptomes Reveals Pathways and Communication Networks That Contribute to the Pathogenesis of Asthma.
Xiting Yan, Qing Liu, Taylor Adams, Jonas Schupp, Sihan Li

bioRxiv· April 2025

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Cigarette smoke induces angiogenic activation in the cancer field through dysregulation of an endothelial microRNA.
Asawari Korde, Anuradha Ramaswamy, Seth Anderson, Lei Jin, Jian-Ge Zhang, Xiting Yan

Commun Biol· March 2025

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Hypoxia-Induced Cardiopulmonary Remodeling and Recovery: Critical Roles of the Proximal Pulmonary Artery, Macrophages, and Exercise.
Abhay B Ramachandra, Prapti Sharma, Ruben De Man, Fadi Nikola, Nicole Guerrera, Xiting Yan

bioRxiv· February 2025

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Predicting lung aging using scRNA-Seq data.
Qi Song, Alex Singh, John E McDonough, Taylor S Adams, Robin Vos, Xiting Yan

PLoS Comput Biol· December 2024

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Single-Cell Analysis Reveals Novel Immune Perturbations in Fibrotic Hypersensitivity Pneumonitis.
Amy Y Zhao, Avraham Unterman, Nebal S Abu Hussein, Prapti Sharma, Fadi Nikola, Xiting Yan

Am J Respir Crit Care Med· November 2024

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SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data.
Yunqing Liu, Ningshan Li, Ji Qi, Gang Xu, Jiayi Zhao, Xiting Yan

Genome Biol· October 2024

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Activated sputum eosinophils associated with exacerbations in children on mepolizumab.
Gabriella E Wilson, James Knight, Qing Liu, Ashish Shelar, Emma Stewart, Xiting Yan

J Allergy Clin Immunol· August 2024

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Biomarkers and molecular endotypes of sarcoidosis: lessons from omics and non-omics studies.
Hong-Long Ji, Nan Mile S Xi, Chandra Mohan, Xiting Yan, Krishan G Jain

Front Immunol· January 2024

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Somatic Mutations: The Next Frontier in Demystifying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis?
Xiting Yan, Naftali Kaminski

Am J Respir Crit Care Med· December 2023

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Sputum alarmins delineate distinct T2 cytokine pathways and unique subtypes of patients with asthma.
Samir Gautam, Jen-Hwa Chu, Avi J Cohen, Ravdeep Kaur, Seohyuk Lee, Xiting Yan

Allergy· December 2023

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Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
Yumin Zheng, Jonas C Schupp, Taylor Adams, Geremy Clair, Aurelien Justet, Xiting Yan

Res Sq· December 2023

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Differences in Mortality Among Patients With Asthma and COPD Hospitalized With COVID-19.
Yunqing Liu, Haseena Rajeevan, Michael Simonov, Seohyuk Lee, F Perry Wilson, Xiting Yan

J Allergy Clin Immunol Pract· November 2023

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Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
Yunqing Liu, Jiayi Zhao, Taylor S Adams, Ningya Wang, Jonas C Schupp, Xiting Yan

BMC Bioinformatics· October 2023

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Peripheral Blood Single-Cell Sequencing Uncovers Common and Specific Immune Aberrations in Fibrotic Lung Diseases.
Amy Y Zhao, Avraham Unterman, Nebal Abu Hussein, Prapti Sharma, Jasper Flint, Xiting Yan

bioRxiv· September 2023

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iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
Yunqing Liu, Jiayi Zhao, Taylor S Adams, Ningya Wang, Jonas C Schupp, Xiting Yan

BMC Bioinformatics· August 2023

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A hybrid machine learning and regression method for cell type deconvolution of spatial barcoding-based transcriptomic data.
Yunqing Liu, Ningshan Li, Ji Qi, Gang Xu, Jiayi Zhao, Xiting Yan

bioRxiv· August 2023

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A Multi-omic Analysis of the Human Lung Reveals Distinct Cell Specific Aging and Senescence Molecular Programs.
Ruben De Man, John E McDonough, Taylor S Adams, Edward P Manning, Greg Myers, Xiting Yan

bioRxiv· April 2023

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Integrated Analysis of Tracheobronchial Fluid from Before and After Cardiopulmonary Bypass Reveals Activation of the Integrated Stress Response and Altered Pulmonary Microvascular Permeability.
Victoria Habet, Ningshan Li, Ji Qi, Gang Peng, Georgia Charkoftaki, Xiting Yan

Yale J Biol Med· March 2023

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Construction of prediction model of lymph node metastasis of early cervical cancer based on machine learning algorithm and its application: experience of 204 cases in a single center.
Yugang Meng, Xiting Yan, Jiangtao Fan

Am J Transl Res· March 2023

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Noninvasive determinants of pulmonary hypertension in interstitial lung disease.
Phillip Joseph, Stella Savarimuthu, Jiayi Zhao, Xiting Yan, Hannah T Oakland

Pulm Circ· January 2023

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