Publications by authors named "Xuecong Fu"

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Sc-TUSV-Ext: Single-Cell Clonal Lineage Inference from Single Nucleotide Variants, Copy Number Alterations, and Structural Variants.
Nishat Anjum Bristy, Xuecong Fu, Russell Schwartz

J Comput Biol· August 2025

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Marker selection strategies for circulating tumor DNA guided by phylogenetic inference.
Xuecong Fu, Zhicheng Luo, Yueqian Deng, William LaFramboise, David Bartlett

Bioinformatics· March 2025

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Marker selection strategies for circulating tumor DNA guided by phylogenetic inference.
Xuecong Fu, Zhicheng Luo, Yueqian Deng, William LaFramboise, David Bartlett

bioRxiv· March 2024

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Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV).
Nishat Anjum Bristy, Xuecong Fu, Russell Schwartz

bioRxiv· December 2023

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Improving and evaluating deep learning models of cellular organization.
Huangqingbo Sun, Xuecong Fu, Serena Abraham, Shen Jin, Robert F Murphy

Bioinformatics· November 2022

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Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
Xuecong Fu, Haoyun Lei, Yifeng Tao, Russell Schwartz

Bioinformatics· June 2022

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Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer.
Haoyun Lei, Xiaoyan A Guo, Yifeng Tao, Kai Ding, Xuecong Fu

Bioinformatics· June 2022

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Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
Haoyun Lei, E Michael Gertz, Alejandro A Schäffer, Xuecong Fu, Yifeng Tao

Bioinformatics· December 2021

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Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers.
Xuecong Fu, Haoyun Lei, Yifeng Tao, Kerstin Heselmeyer-Haddad, Irianna Torres

J Comput Biol· November 2021

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Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis.
Yifeng Tao, Haoyun Lei, Xuecong Fu, Adrian V Lee, Jian Ma

Bioinformatics· July 2020

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