Publications by authors named "Yao-Cheng Lin"

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Chromosomal deletions in banana somaclonal variants reveal negative regulators of immunity underlying wilt resistance.
Puyam Tondonba Singh, Bo-Han Hou, Yi-Heng Tsai, Yuh Tzean, Chih-Ping Chao, Yao-Cheng Lin

Proc Natl Acad Sci U S A· December 2025

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N-hydroxy-pipecolic acid-mediated signal transduction and resistance requires DAWDLE.
Jung-Kai Hsu, Hsin-Yi Hsieh, Chien-Hau Huang, Chen-Yun Hsieh, Jheng-Yang Ou, Yao-Cheng Lin

Plant Physiol· October 2025

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Transposable elements drive evolution and perturb gene expression in Brassica rapa and B. oleracea.
Po-Xing Zheng, Chia-Ying Ko, Jheng-Yan Ou, Andrea Zuccolo, Yao-Cheng Lin

Plant J· September 2025

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Comparative genomic analysis uncovered phylogenetic diversity, evolution of virulence factors, and horizontal gene transfer events in tomato bacterial spot .
Chien-Jui Huang, Ting-Li Wu, Yu-Lin Wu, Ruei-Shiuan Wang, Yao-Cheng Lin

Front Microbiol· November 2024

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Transgene-free CRISPR/Cas9-mediated gene editing through protoplast-to-plant regeneration enhances active compounds in Salvia miltiorrhiza.
Chen-Tran Hsu, Chi-Chou Chiu, Pao-Yuan Hsiao, Chih-Yu Lin, Sychyi Cheng, Yao-Cheng Lin, Shinn-Zong Lin, Choun-Sea Lin

Plant Biotechnol J· June 2024

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Complete Genome Sequence Resource of Strain F1-1 that Causes Soft Rot Disease of Taro.
Chien-Jui Huang, Ting-Li Wu, Po-Xing Zheng, Jheng-Yang Ou, Chao-Ling Ting, Yao-Cheng Lin

Plant Dis· June 2023

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Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato.
Derek W Barchenger, Yu-Ming Hsu, Jheng-Yang Ou, Ya-Ping Lin, Yao-Cheng Lin

Sci Rep· May 2022

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DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration.
Choun-Sea Lin, Chen-Tran Hsu, Yu-Hsuan Yuan, Po-Xing Zheng, Fu-Hui Wu, Yu-Lin Wu, Steven Lin, Shu-I Lin, Yao-Cheng Lin

Plant Physiol· March 2022

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Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration.
Chen-Tran Hsu, Yu-Hsuan Yuan, Yao-Cheng Lin, Steven Lin, Qiao-Wei Cheng, Choun-Sea Lin

CRISPR J· October 2021

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Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium subsp. .
Chien-Jui Huang, Ting-Li Wu, Po-Xing Zheng, Jheng-Yang Ou, Hui-Fang Ni, Yao-Cheng Lin

Front Microbiol· September 2021

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Author Correction: The Apostasia genome and the evolution of orchids.
Guo-Qiang Zhang, Ke-Wei Liu, Zhen Li, Rolf Lohaus, Yu-Yun Hsiao, Yao-Cheng Lin, Min Lin, Wan-Lin Wu

Nature· July 2020

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Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos.
Andreia S Rodrigues, Inês Chaves, Bruno Vasques Costa, Yao-Cheng Lin, Susana Lopes

Sci Rep· August 2019

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Erratum for Navia et al., "Draft Genome Assembly of the False Spider Mite ".
Denise Navia, Valdenice M Novelli, Stephane Rombauts, Juliana Freitas-Astúa, Renata Santos de Mendonça, Yao-Cheng Lin

Microbiol Resour Announc· July 2019

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Reference genome and comparative genome analysis for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine.
Katlyn Borgers, Jheng-Yang Ou, Po-Xing Zheng, Petra Tiels, Annelies Van Hecke, Yao-Cheng Lin

BMC Genomics· July 2019

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Draft Genome Assembly of the False Spider Mite .
Denise Navia, Valdenice M Novelli, Stephane Rombauts, Juliana Freitas-Astúa, Renata Santos de Mendonça, Yao-Cheng Lin

Microbiol Resour Announc· February 2019

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Functional and evolutionary genomic inferences in through genome and population sequencing of American and European aspen.
Yao-Cheng Lin, Jing Wang, Nicolas Delhomme, Bastian Schiffthaler, Görel Sundström

Proc Natl Acad Sci U S A· November 2018

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IMA Genome-F 8: Draft genome of , , and .
Brenda D Wingfield, Dave K Berger, Emma T Steenkamp, Hye-Jin Lim, Tuan A Duong, Yao-Cheng Lin

IMA Fungus· December 2017

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Complete Genome Sequence of C1L, a Plant Growth-Promoting Rhizobacterium from the Rhizosphere of Formosa Lily in Taiwan.
Chien-Jui Huang, Po-Xing Zheng, Jheng-Yang Ou, Yao-Cheng Lin, Chao-Ying Chen

Genome Announc· November 2017

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The Apostasia genome and the evolution of orchids.
Guo-Qiang Zhang, Ke-Wei Liu, Zhen Li, Rolf Lohaus, Yu-Yun Hsiao, Yao-Cheng Lin, Min Lin, Wan-Lin Wu

Nature· September 2017

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Systems genetics reveals a transcriptional network associated with susceptibility in the maize-grey leaf spot pathosystem.
Nanette Christie, Alexander A Myburg, Fourie Joubert, Shane L Murray, Maryke Carstens, Yao-Cheng Lin, Jacqueline Meyer

Plant J· February 2017

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Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).
Nicolas Delhomme, Görel Sundström, Neda Zamani, Henrik Lantz, Yao-Cheng Lin

PLoS One· May 2016

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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Jeanine L Olsen, Pierre Rouzé, Bram Verhelst, Yao-Cheng Lin, Till Bayer

Nature· February 2016

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The Plant Genome Integrative Explorer Resource: PlantGenIE.org.
David Sundell, Chanaka Mannapperuma, Sergiu Netotea, Nicolas Delhomme, Yao-Cheng Lin

New Phytol· December 2015

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Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda).
Sonali Sachin Ranade, Yao-Cheng Lin, Yves Van de Peer, María Rosario García-Gil

BMC Genet· December 2015

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Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.
Sarieh Ghorbani, Yao-Cheng Lin, Boris Parizot, Ana Fernandez, Maria Fransiska Njo

J Exp Bot· August 2015

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