Publications by authors named "Yaochen Xu"

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Spatial histology and gene-expression representation and generative learning via online self-distillation contrastive learning.
Qianyi Yan, Xuan Li, Jiangnan Cui, Jianming Rong, Jingsong Zhang, Yaochen Xu

Brief Bioinform· July 2025

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TRAmHap: accurate prediction of transcriptional activity from DNA methylation haplotypes in bisulfite-sequencing data.
Siqi Gao, Hanwen Zhu, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Yaochen Xu

Brief Bioinform· July 2023

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Using Machine Learning Methods in Identifying Genes Associated with COVID-19 in Cardiomyocytes and Cardiac Vascular Endothelial Cells.
Yaochen Xu, Qinglan Ma, Jingxin Ren, Lei Chen, Wei Guo

Life (Basel)· April 2023

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Characterization of chromatin accessibility patterns in different mouse cell types using machine learning methods at single-cell resolution.
Yaochen Xu, FeiMing Huang, Wei Guo, KaiYan Feng, Lin Zhu

Front Genet· March 2023

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Single-cell RNA-seq reveals clonal diversity and prognostic genes of relapsed multiple myeloma.
Haiyan He, Zifeng Li, Jing Lu, Wanting Qiang, Sihan Jiang, Yaochen Xu

Clin Transl Med· March 2022

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The DNA methylation haplotype (mHap) format and mHapTools.
Zhiqiang Zhang, Yuhao Dan, Yaochen Xu, Jiarui Zhang, Xiaoqi Zheng

Bioinformatics· December 2021

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Single-Cell RNA-seq Reveals Characteristics of Malignant Cells and Immune Microenvironment in Subcutaneous Panniculitis-Like T-Cell Lymphoma.
Zifeng Li, Hongsheng Wang, Rui Dong, Jie Man, Li Sun, Yaochen Xu

Front Oncol· March 2021

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Identification of leukemia stem cell expression signatures through Monte Carlo feature selection strategy and support vector machine.
JiaRui Li, Lin Lu, Yu-Hang Zhang, YaoChen Xu, Min Liu

Cancer Gene Ther· February 2020

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eGPS 1.0: comprehensive software for multi-omic and evolutionary analyses.
Dalang Yu, Lili Dong, Fangqi Yan, Hailong Mu, Bixia Tang, Yaochen Xu, Yi-Xue Li

Natl Sci Rev· October 2019

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Network-based method for mining novel HPV infection related genes using random walk with restart algorithm.
Liucun Zhu, Fangchu Su, YaoChen Xu, Quan Zou

Biochim Biophys Acta Mol Basis Dis· June 2018

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Identifying and analyzing different cancer subtypes using RNA-seq data of blood platelets.
Yu-Hang Zhang, Tao Huang, Lei Chen, YaoChen Xu, Yu Hu

Oncotarget· October 2017

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CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.
Guangyong Zheng, Yaochen Xu, Xiujun Zhang, Zhi-Ping Liu, Zhuo Wang

BMC Bioinformatics· December 2016

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Prediction of S-nitrosylation modification sites based on kernel sparse representation classification and mRMR algorithm.
Guohua Huang, Lin Lu, Kaiyan Feng, Jun Zhao, Yuchao Zhang, Yaochen Xu

Biomed Res Int· May 2015

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