Publications by authors named "Yibi Chen"

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Whole-genome duplication in an algal symbiont bolsters coral heat tolerance.
Katherine E Dougan, Anthony J Bellantuono, Tim Kahlke, Raffaela M Abbriano, Yibi Chen

Sci Adv· July 2024

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Genome-wide transcriptome analysis reveals the diversity and function of long non-coding RNAs in dinoflagellates.
Yibi Chen, Katherine E Dougan, Quan Nguyen, Debashish Bhattacharya, Cheong Xin Chan

NAR Genom Bioinform· March 2024

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Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates.
Sarah Shah, Katherine E Dougan, Yibi Chen, Rosalyn Lo, Gemma Laird

ISME J· January 2024

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Multi-omics analysis reveals the molecular response to heat stress in a "red tide" dinoflagellate.
Katherine E Dougan, Zhi-Luo Deng, Lars Wöhlbrand, Carsten Reuse, Boyke Bunk, Yibi Chen

Genome Biol· November 2023

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Gene duplication is the primary driver of intraspecific genomic divergence in coral algal symbionts.
Sarah Shah, Katherine E Dougan, Yibi Chen, Debashish Bhattacharya, Cheong Xin Chan

Open Biol· September 2023

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Traffic forecasting with graph spatial-temporal position recurrent network.
Yibi Chen, Kenli Li, Chai Kiat Yeo, Keqin Li

Neural Netw· May 2023

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Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts.
Katherine E Dougan, Raúl A González-Pech, Timothy G Stephens, Sarah Shah, Yibi Chen

Trends Microbiol· September 2022

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Improved Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes.
Yibi Chen, Sarah Shah, Katherine E Dougan, Madeleine J H van Oppen, Debashish Bhattacharya

Microorganisms· August 2022

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Genome-Guided Analysis of Seven Weed Species Reveals Conserved Sequence and Structural Features of Key Gene Targets for Herbicide Development.
Sarah Shah, Thierry Lonhienne, Cody-Ellen Murray, Yibi Chen, Katherine E Dougan, Gerhard Schenk

Front Plant Sci· June 2022

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Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions.
Rosalyn Lo, Katherine E Dougan, Yibi Chen, Sarah Shah, Debashish Bhattacharya

Front Plant Sci· April 2022

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Nuclear genome of a pedinophyte pinpoints genomic innovation and streamlining in the green algae.
Sonja I Repetti, Cintia Iha, Kavitha Uthanumallian, Christopher J Jackson, Yibi Chen

New Phytol· March 2022

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Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium.
Cintia Iha, Katherine E Dougan, Javier A Varela, Viridiana Avila, Christopher J Jackson, Yibi Chen

Curr Biol· April 2021

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Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium.
Raúl A González-Pech, Timothy G Stephens, Yibi Chen, Amin R Mohamed, Yuanyuan Cheng

BMC Biol· April 2021

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Comparative Genomics Supports That Brazilian Bioethanol Comprise a Unified Group of Domesticated Strains Related to Cachaça Spirit Yeasts.
Ana Paula Jacobus, Timothy G Stephens, Pierre Youssef, Raul González-Pech, Michael M Ciccotosto-Camp, Yibi Chen

Front Microbiol· April 2021

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Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex.
Sarah Shah, Yibi Chen, Debashish Bhattacharya, Cheong Xin Chan

Sci Rep· June 2020

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Evidence That Inconsistent Gene Prediction Can Mislead Analysis of Dinoflagellate Genomes.
Yibi Chen, Raúl A González-Pech, Timothy G Stephens, Debashish Bhattacharya, Cheong Xin Chan

J Phycol· February 2020

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