Publications by authors named "Yingbo Cui"

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SpaBalance: Balanced Learning for Efficient Spatial Multi-Omics Decoding.
Yingbo Cui, Yong Zhao, Canqun Yang, Tao Tang, Xiangke Liao

Adv Sci (Weinh)· December 2025

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[Analysis of OFD1 gene variant in a child with Oral-facial-digital syndrome].
Liya Zhang, Yu Liu, Lulu Yan, Xiamin Jin, Lijiao Zhu, Yingbo Cui

Zhonghua Yi Xue Yi Chuan Xue Za Zhi· June 2025

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Fast noisy long read alignment with multi-level parallelism.
Zeyu Xia, Canqun Yang, Chenchen Peng, Yifei Guo, Yufei Guo, Yingbo Cui

BMC Bioinformatics· May 2025

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A survey of sequence-to-graph mapping algorithms in the pangenome era.
Yingbo Cui, Chenchen Peng, Zeyu Xia, Canqun Yang, Yifei Guo

Genome Biol· May 2025

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CSV-Filter: a deep learning-based comprehensive structural variant filtering method for both short and long reads.
Zeyu Xia, Weiming Xiang, Qingzhe Wang, Xingze Li, Yilin Li, Yingbo Cui

Bioinformatics· September 2024

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Carnitine-acylcarnitine translocase deficiency caused by gene heterozygous variants in twins: a case report.
Liya Zhang, Ying Hu, Min Xie, Yuxin Zhang, Kuankuan Cen, Yingbo Cui

J Int Med Res· April 2023

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MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data.
Zihang Wang, Yingbo Cui, Shaoliang Peng, Xiangke Liao, Yangbo Yu

Comput Biol Chem· August 2022

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A Review of Parallel Implementations for the Smith-Waterman Algorithm.
Zeyu Xia, Yingbo Cui, Ang Zhang, Tao Tang, Lin Peng

Interdiscip Sci· March 2022

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VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments.
Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng

BMC Bioinformatics· June 2021

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CRISP-view: a database of functional genetic screens spanning multiple phenotypes.
Yingbo Cui, Xiaolong Cheng, Qing Chen, Bicna Song, Anthony Chiu

Nucleic Acids Res· January 2021

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OffScan: a universal and fast CRISPR off-target sites detection tool.
Yingbo Cui, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang

BMC Genomics· March 2020

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A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer.
Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang

IEEE/ACM Trans Comput Biol Bioinform· January 2020

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Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute.
Binbin Wang, Mei Wang, Wubing Zhang, Tengfei Xiao, Chen-Hao Chen, Yingbo Cui

Nat Protoc· March 2019

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Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture.
Shaoliang Peng, Minxia Cheng, Kaiwen Huang, YingBo Cui, Zhiqiang Zhang

BMC Bioinformatics· August 2018

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Review of CRISPR/Cas9 sgRNA Design Tools.
Yingbo Cui, Jiaming Xu, Minxia Cheng, Xiangke Liao, Shaoliang Peng

Interdiscip Sci· June 2018

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A Hybrid Parallel Strategy Based on String Graph Theory to Improve De Novo DNA Assembly on the TianHe-2 Supercomputer.
Feng Zhang, Xiangke Liao, Shaoliang Peng, Yingbo Cui, Bingqiang Wang

Interdiscip Sci· June 2016

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B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.
Yingbo Cui, Xiangke Liao, Xiaoqian Zhu, Bingqiang Wang, Shaoliang Peng

Interdiscip Sci· March 2016

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A Massively Parallel Computational Method of Reading Index Files for SOAPsnv.
Xiaoqian Zhu, Shaoliang Peng, Shaojie Liu, Yingbo Cui, Xiang Gu

Interdiscip Sci· December 2015

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Protective Effects of Scutellarin on Human Cardiac Microvascular Endothelial Cells against Hypoxia-Reoxygenation Injury and Its Possible Target-Related Proteins.
Meina Shi, Yingting Liu, Lixing Feng, Yingbo Cui, Yajuan Chen

Evid Based Complement Alternat Med· November 2015

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HSPA9 overexpression inhibits apoptin-induced apoptosis in the HepG2 cell line.
Chuanmei Peng, Pu Yang, Yingbo Cui, Ming He, Leilei Liang

Oncol Rep· June 2013

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[Expression of neutrophil adhesion molecule CD11b as an early diagnostic marker for neonatal sepsis].
Ying-bo Cui, Li-zhong Du, Yi-zhen Chen, Yu-bo Yu, Feng-min Wang

Zhonghua Er Ke Za Zhi· May 2003

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