Publications by authors named "Yingke Ma"

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FemXpress: Systematic Analysis of X Chromosome Inactivation Heterogeneity in Female Single-Cell RNA-Seq Samples.
Xin Wang, Yingke Ma, Fan Li, Wentao Cui, Tianshi Pan, Sinan Ma

Adv Sci (Weinh)· September 2025

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The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion.
Yingke Ma, Xuetong Zhao, Yaokai Jia, Zhenxian Han, Caixia Yu

Genomics Proteomics Bioinformatics· May 2025

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DRED: A Comprehensive Database of Genes Related to Repeat Expansion Diseases.
Qingqing Shi, Min Dai, Yingke Ma, Jun Liu, Xiuying Liu

Genomics Proteomics Bioinformatics· December 2024

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The volatile organic compounds generated from the Maillard reaction between l-ascorbic acid and l-cysteine in hot compressed water.
Liang Feng, Yan Yang, Ya-Ting Xie, Wen-Yi Yan, Ying-Ke Ma

J Sci Food Agric· August 2024

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The P10K database: a data portal for the protist 10 000 genomes project.
Xinxin Gao, Kai Chen, Jie Xiong, Dong Zou, Fangdian Yang, Yingke Ma, Lina Ma

Nucleic Acids Res· January 2024

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PPGR: a comprehensive perennial plant genomes and regulation database.
Sen Yang, Wenting Zong, Lingling Shi, Ruisi Li, Zhenshu Ma, Shubao Ma, Yingke Ma

Nucleic Acids Res· January 2024

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Autoinducer-2 promotes adherence of through facilitating the expression of MSHA type IV pili genes mediated by c-di-GMP.
Yi Li, Shuo Han, Yuqi Wang, Mengyuan Qin, Chengjin Lu, Yingke Ma

Appl Environ Microbiol· November 2023

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MethBank 4.0: an updated database of DNA methylation across a variety of species.
Mochen Zhang, Wenting Zong, Dong Zou, Guoliang Wang, Wei Zhao, Yingke Ma

Nucleic Acids Res· January 2023

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MPoxVR: A comprehensive genomic resource for monkeypox virus variant surveillance.
Yingke Ma, Meili Chen, Yiming Bao, Shuhui Song,

Innovation (Camb)· September 2022

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CCAS: One-stop and comprehensive annotation system for individual cancer genome at multi-omics level.
Xinchang Zheng, Wenting Zong, Zhaohua Li, Yingke Ma, Yanling Sun

Front Genet· August 2022

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scMethBank: a database for single-cell whole genome DNA methylation maps.
Wenting Zong, Hongen Kang, Zhuang Xiong, Yingke Ma, Tong Jin

Nucleic Acids Res· January 2022

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EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study.
Zhuang Xiong, Fei Yang, Mengwei Li, Yingke Ma, Wei Zhao

Nucleic Acids Res· January 2022

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GMQN: A Reference-Based Method for Correcting Batch Effects and Probe Bias in HumanMethylation BeadChip.
Zhuang Xiong, Mengwei Li, Yingke Ma, Rujiao Li, Yiming Bao

Front Genet· January 2022

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Genome Warehouse: A Public Repository Housing Genome-scale Data.
Meili Chen, Yingke Ma, Song Wu, Xinchang Zheng, Hongen Kang

Genomics Proteomics Bioinformatics· August 2021

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The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR.
Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Yingke Ma

Genomics Proteomics Bioinformatics· December 2020

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The 2019 novel coronavirus resource.
Wen-Ming Zhao, Shu-Hui Song, Mei-Li Chen, Dong Zou, Li-Na Ma, Ying-Ke Ma

Yi Chuan· February 2020

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EWAS Data Hub: a resource of DNA methylation array data and metadata.
Zhuang Xiong, Mengwei Li, Fei Yang, Yingke Ma, Jian Sang

Nucleic Acids Res· January 2020

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IDP-denovo: de novo transcriptome assembly and isoform annotation by hybrid sequencing.
Shuhua Fu, Yingke Ma, Hui Yao, Zhichao Xu, Shilin Chen

Bioinformatics· July 2018

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Single-cell transcriptome analysis reveals widespread monoallelic gene expression in individual rice mesophyll cells.
Yingying Han, Xiao Chu, Haopeng Yu, Ying-Ke Ma, Xiu-Jie Wang

Sci Bull (Beijing)· October 2017

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ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data.
Guan-Zheng Luo, Wei Yang, Ying-Ke Ma, Xiu-Jie Wang

Bioinformatics· February 2014

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PsRobot: a web-based plant small RNA meta-analysis toolbox.
Hua-Jun Wu, Ying-Ke Ma, Tong Chen, Meng Wang, Xiu-Jie Wang

Nucleic Acids Res· July 2012

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