Publications by authors named "Yingxin Lin"

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Stress hyperglycemia ratio as a predictor of acute kidney injury and its outcomes in critically ill patients.
Yingxin Lin, Sheng Zhang, Zeling Chen, Xuwei Lin, Xueqing Wang

Ren Fail· December 2025

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Improving polygenic risk prediction performance by integrating electronic health records through phenotype embedding.
Leqi Xu, Wangjie Zheng, Jiaqi Hu, Yingxin Lin, Jia Zhao

Am J Hum Genet· December 2025

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Chromosome-level genome assembly and annotation of the tropical sea cucumber Bohadschia ocellate.
Qianying Huang, Xuan Wang, Zhou Qin, Dingding Fan, Hua Ge, Yingxin Lin

Sci Data· December 2025

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Spatial dynamics of brain development and neuroinflammation.
Di Zhang, Leslie A Rubio Rodríguez-Kirby, Yingxin Lin, Wenqi Wang, Mengyi Song

Nature· November 2025

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UNICORN: Towards universal cellular expression prediction with a multi-task learning framework.
Tianyu Liu, Tinglin Huang, Lijun Wang, Yingxin Lin, Rex Ying

Nat Commun· October 2025

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VISTA Uncovers Missing Gene Expression and Spatial-induced Information for Spatial Transcriptomic Data Analysis.
Tianyu Liu, Yingxin Lin, Xiao Luo, Yizhou Sun, Hongyu Zhao

Res Sq· October 2025

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The Influence of Embedded Properties on the Liberation Characteristics of Macerals in Subbituminous Coal.
Chenjie Tang, Wenli Liu, Jia Yu, Yingxin Lin, Menghao Ren

ACS Omega· September 2025

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Genome-wide analysis of NAC gene family in Brassica campestris ssp. chinensis and characterization of BcNAC134.
Shuilin Yuan, YingXin Lin, Yuan Wang, Changwei Zhang, Dong Xiao, Xilin Hou

Plant Cell Rep· September 2025

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The current landscape and emerging challenges of benchmarking single-cell methods.
Yue Cao, Lijia Yu, Marni Torkel, Sanghyun Kim, Yingxin Lin

Brief Bioinform· August 2025

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Single-cell transcriptomic and chromatin dynamics of the human brain in PTSD.
Ahyeon Hwang, Mario Skarica, Siwei Xu, Jensine Coudriet, Che Yu Lee, Lin Lin, Yingxin Lin

Nature· July 2025

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Emotion regulation strategies and mental wellbeing among Chinese college students during COVID-19: the moderating roles of confinement and attentional bias.
Mengqi Xiao, Yiran Wang, Yaling Zhuang, Yier Luo, Li Liu, Yingxin Lin

Front Psychol· June 2025

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Systemic immune-inflammatory complex index as a novel predictor of sepsis prognosis: a retrospective cohort study using MIMIC-IV.
Xueqing Wang, Yingxin Lin, Sheng Zhang, Junshi Wang, Bin Huang

Front Med (Lausanne)· June 2025

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Interpretable Differential Abundance Signature (iDAS).
Lijia Yu, Yingxin Lin, Xiangnan Xu, Pengyi Yang, Jean Y H Yang

Small Methods· May 2025

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scMODAL: a general deep learning framework for comprehensive single-cell multi-omics data alignment with feature links.
Gefei Wang, Jia Zhao, Yingxin Lin, Tianyu Liu, Yize Zhao

Nat Commun· May 2025

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VISTA Uncovers Missing Gene Expression and Spatial-induced Information for Spatial Transcriptomic Data Analysis.
Tianyu Liu, Yingxin Lin, Xiao Luo, Yizhou Sun, Hongyu Zhao

bioRxiv· March 2025

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A CD26 tendon stem progenitor cell population contributes to tendon repair and heterotopic ossification.
Siwen Chen, Yingxin Lin, Hao Yang, Zihao Li, Sifang Li

Nat Commun· January 2025

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Scope+: an open source generalizable architecture for single-cell RNA-seq atlases at sample and cell levels.
Danqing Yin, Yue Cao, Junyi Chen, Candice L Y Mak, Ken H O Yu, Yingxin Lin

Bioinformatics· December 2024

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Antecedent Cardiac Arrest Status of Donation After Circulatory Determination of Death (DCDD) Kidney Donors and the Risk of Delayed Graft Function After Kidney Transplantation: A Cohort Study.
Adam Philipoff, Yingxin Lin, Armando Teixeira-Pinto, Ryan Gately, Jonathan C Craig

Transplantation· October 2024

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Single-cell RNA sequencing reveals melanoma cell state-dependent heterogeneity of response to MAPK inhibitors.
Su Yin Lim, Yingxin Lin, Jenny H Lee, Bernadette Pedersen, Ashleigh Stewart

EBioMedicine· September 2024

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Leveraging single-cell RNA-seq for uncovering naïve B cells associated with better prognosis of hepatocellular carcinoma.
Qingjia Sun, Rui Gao, Yingxin Lin, Xianchao Zhou, Tao Wang

MedComm (2020)· September 2024

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Genetically defined causal effects of natural killer cells related traits in risk of infection: a Mendelian randomization study.
Yingxin Lin, Sheng Zhang, Xueqing Wang, Junshi Wang, Lei Huang

BMC Infect Dis· September 2024

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INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources.
Jia Zhao, Xiangyu Zhang, Gefei Wang, Yingxin Lin, Tianyu Liu

bioRxiv· September 2024

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Spatial dynamics of mammalian brain development and neuroinflammation by multimodal tri-omics mapping.
Rong Fan, Di Zhang, Leslie Rodríguez-Kirby, Yingxin Lin, Mengyi Song

Res Sq· August 2024

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SANTO: a coarse-to-fine alignment and stitching method for spatial omics.
Haoyang Li, Yingxin Lin, Wenjia He, Wenkai Han, Xiaopeng Xu

Nat Commun· July 2024

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Spatial dynamics of mammalian brain development and neuroinflammation by multimodal tri-omics mapping.
Di Zhang, Leslie A Rubio Rodríguez-Kirby, Yingxin Lin, Mengyi Song, Li Wang

bioRxiv· July 2024

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