Publications by authors named "Yosuke Shida"

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Extracting regions of lipid droplets from confocal microscopy images utilizing optical properties of oleaginous yeast.
Ryosuke Harakawa, Yuki Imai, Yuka Takahashi, Seiya Ueda, Hiromi Shoji, Yosuke Shida

Appl Microbiol Biotechnol· September 2025

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Ultrahigh-throughput screening of environmental bacteria for proteolytic activity using droplet-based microfluidics.
Akihiro Nakamura, Yoshiyuki Suzuki, Nobuyuki Homma, Yosuke Shida, Rikako Sato

Appl Environ Microbiol· July 2025

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Identification and characterization of the suppressed lipid accumulation-related gene, SLA1, in the oleaginous yeast Lipomyces starkeyi.
Rikako Sato, Harutake Yamazaki, Kazuki Mori, Sachiyo Aburatani, Koji Ishiya, Yosuke Shida

Biosci Biotechnol Biochem· October 2024

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Ultrahigh-throughput screening of Trichoderma reesei strains capable of carbon catabolite repression release and cellulase hyperproduction using a microfluidic droplet platform.
Xuan Chinh Luu, Yosuke Shida, Yoshiyuki Suzuki, Daiki Kuwahara, Takeshi Fujimoto

Biosci Biotechnol Biochem· October 2023

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A microfluidic device for simultaneous detection of enzyme secretion and elongation of a single hypha.
Ayaka Itani, Yosuke Shida, Wataru Ogasawara

Front Microbiol· March 2023

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The monitoring of oil production process by deep learning based on morphology in oleaginous yeasts.
Yukina Kitahara, Ayaka Itani, Kazuma Ohtomo, Yosuke Oda, Yuka Takahashi, Yosuke Shida

Appl Microbiol Biotechnol· February 2023

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LsSpt23p is a regulator of triacylglycerol synthesis in the oleaginous yeast Lipomyces starkeyi.
Hiroaki Takaku, Haruka Kazama, Rikako Sato, Kazuki Mori, Satoshi Ara, Yosuke Shida

Appl Microbiol Biotechnol· February 2023

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A novel high-throughput approach for transforming filamentous fungi employing a droplet-based microfluidic platform.
Xuan Chinh Luu, Yosuke Shida, Yoshiyuki Suzuki, Naomi Sato, Akihiro Nakumura

N Biotechnol· December 2022

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Using gel microdroplets to develop a simple high-throughput screening platform for oleaginous microorganisms.
Yuma Tanaka, Akihiro Nakamura, Yoshiyuki Suzuki, Kodai Maruta, Yosuke Shida

J Biotechnol· November 2022

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A real-time monitoring system for automatic morphology analysis of yeast cultivation in a jar fermenter.
Yukina Kitahara, Ayaka Itani, Yosuke Oda, Makoto Okamura, Mizue Mizoshiri, Yosuke Shida

Appl Microbiol Biotechnol· June 2022

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7-Aminocoumarin-4-acetic Acid as a Fluorescent Probe for Detecting Bacterial Dipeptidyl Peptidase Activities in Water-in-Oil Droplets and in Bulk.
Akihiro Nakamura, Nobuyuki Honma, Yuma Tanaka, Yoshiyuki Suzuki, Yosuke Shida

Anal Chem· February 2022

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Analysis of the light regulatory mechanism in carotenoid production in Rhodosporidium toruloides NBRC 10032.
Khanh Dung Pham, Yuuki Hakozaki, Takeru Takamizawa, Atsushi Yamazaki, Harutake Yamazaki, Yosuke Shida

Biosci Biotechnol Biochem· July 2021

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Isolation and characterization of Lipomyces starkeyi mutants with greatly increased lipid productivity following UV irradiation.
Hiroaki Takaku, Sayaka Ebina, Kotoha Kasuga, Rikako Sato, Satoshi Ara, Yosuke Shida

J Biosci Bioeng· June 2021

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Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7.
Akihiro Nakamura, Yoshiyuki Suzuki, Yasumitsu Sakamoto, Saori Roppongi, Chisato Kushibiki, Yosuke Shida

Sci Rep· April 2021

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Disruption of alpha-tubulin releases carbon catabolite repression and enhances enzyme production in Trichoderma reesei even in the presence of glucose.
Nozomu Shibata, Hiroshi Kakeshita, Kazuaki Igarashi, Yasushi Takimura, Yosuke Shida

Biotechnol Biofuels· February 2021

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Functional analysis of a novel lytic polysaccharide monooxygenase from Streptomyces griseus on cellulose and chitin.
Kazuki Sato, Daisuke Chiba, Sayaka Yoshida, Mayu Takahashi, Kazuhide Totani, Yosuke Shida

Int J Biol Macromol· December 2020

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Characterization of earthworm α-amylases for dietary supplement development and biomass utilization.
Shin-Ichi Akazawa, Yuki Ikarashi, Keisuke Yokoyama, Yosuke Shida, Wataru Ogasawara

Environ Sci Pollut Res Int· September 2020

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Involvement of Xyr1 and Are1 for Trichodermapepsin Gene Expression in Response to Cellulose and Galactose in Trichoderma reesei.
Nayani Dhanushka Daranagama, Yoshiyuki Suzuki, Yosuke Shida, Wataru Ogasawara

Curr Microbiol· August 2020

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Effect of light on carotenoid and lipid production in the oleaginous yeast .
Khanh Dung Pham, Yosuke Shida, Atsushi Miyata, Takeru Takamizawa, Yoshiyuki Suzuki

Biosci Biotechnol Biochem· July 2020

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A novel electroporation procedure for highly efficient transformation of Lipomyces starkeyi.
Hiroaki Takaku, Atsumi Miyajima, Haruka Kazama, Rikako Sato, Satoshi Ara, Yosuke Shida

J Microbiol Methods· February 2020

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Cellulase productivity of Trichoderma reesei mutants developed in Japan varies with varying pH conditions.
Hiroki Hirasawa, Koki Shioya, Kazuki Mori, Kosuke Tashiro, Sachiyo Aburatani, Yosuke Shida

J Biosci Bioeng· September 2019

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Fragment-based discovery of the first nonpeptidyl inhibitor of an S46 family peptidase.
Yasumitsu Sakamoto, Yoshiyuki Suzuki, Akihiro Nakamura, Yurie Watanabe, Mizuki Sekiya, Yosuke Shida

Sci Rep· September 2019

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Highly selective isolation and characterization of Lipomyces starkeyi mutants with increased production of triacylglycerol.
Harutake Yamazaki, Suzuka Kobayashi, Sayaka Ebina, Shiho Abe, Satoshi Ara, Yosuke Shida

Appl Microbiol Biotechnol· August 2019

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Surgical Procedures and Short-Term Outcomes of a Complete Laparoscopic Colectomy with Intracorporeal Anastomosis for Right-Sided Colon Cancer.
Satoru Yamaguchi, Yosuke Shida, Keisuke Ihara, Hideo Ogata, Hiroto Muroi

Am Surg· May 2019

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Nutritional status predicts adjuvant chemotherapy outcomes for stage III colorectal cancer.
Keisuke Ihara, Satoru Yamaguchi, Yosuke Shida, Junki Fujita, Shotaro Matsudera

J Anus Rectum Colon· April 2019

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