Publications by authors named "Yuichiro Mishima"

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Genome-wide Survey of Ribosome Collision.
Peixun Han, Yuichi Shichino, Tilman Schneider-Poetsch, Mari Mito, Satoshi Hashimoto, Yuichiro Mishima

Cell Rep· December 2025

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Translation of zinc finger domains induces ribosome collision and Znf598-dependent mRNA decay in zebrafish.
Kota Ishibashi, Yuichi Shichino, Peixun Han, Kimi Wakabayashi, Mari Mito, Yuichiro Mishima

PLoS Biol· December 2024

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Znf598-mediated Rps10/eS10 ubiquitination contributes to the ribosome ubiquitination dynamics during zebrafish development.
Nozomi Ugajin, Koshi Imami, Hiraku Takada, Yasushi Ishihama, Shinobu Chiba, Yuichiro Mishima

RNA· December 2023

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Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Xuewei Zhao, Ding Ma, Kensuke Ishiguro, Hironori Saito, Shinichiro Akichika, Yuichiro Mishima

Cell· December 2023

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pSNAP: Proteome-wide analysis of elongating nascent polypeptide chains.
Junki Uchiyama, Rohini Roy, Dan Ohtan Wang, Kazuya Morikawa, Yuka Kawahara, Yuichiro Mishima

iScience· July 2022

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Ribosome slowdown triggers codon-mediated mRNA decay independently of ribosome quality control.
Yuichiro Mishima, Peixun Han, Kota Ishibashi, Seisuke Kimura, Shintaro Iwasaki

EMBO J· March 2022

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Tethered Function Assay to Study RNA-Regulatory Proteins in Zebrafish Embryos.
Yuichiro Mishima, Kunio Inoue

Methods Mol Biol· March 2021

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Protocol for Disome Profiling to Survey Ribosome Collision in Humans and Zebrafish.
Mari Mito, Yuichiro Mishima, Shintaro Iwasaki

STAR Protoc· December 2020

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Genome-wide Survey of Ribosome Collision.
Peixun Han, Yuichi Shichino, Tilman Schneider-Poetsch, Mari Mito, Satoshi Hashimoto, Yuichiro Mishima

Cell Rep· May 2020

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Deadenylation by the CCR4-NOT complex contributes to the turnover of hairy-related mRNAs in the zebrafish segmentation clock.
Yuuri Fujino, Kazuya Yamada, Chihiro Sugaya, Yuko Ooka, Hiroki Ovara, Yuichiro Mishima

FEBS Lett· October 2018

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PAINTing translation.
Yuichiro Mishima

Nat Chem Biol· September 2018

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Pervasive yet nonuniform contributions of Dcp2 and Cnot7 to maternal mRNA clearance in zebrafish.
Yuichiro Mishima, Yukihide Tomari

Genes Cells· July 2017

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Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish.
Yuichiro Mishima, Yukihide Tomari

Mol Cell· March 2016

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Roles of mRNA fate modulators Dhh1 and Pat1 in TNRC6-dependent gene silencing recapitulated in yeast.
Shiho Makino, Yuichiro Mishima, Kunio Inoue, Toshifumi Inada

J Biol Chem· March 2015

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MicroRNAs trigger dissociation of eIF4AI and eIF4AII from target mRNAs in humans.
Akira Fukao, Yuichiro Mishima, Naoki Takizawa, Shigenori Oka, Hiroaki Imataka

Mol Cell· October 2014

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Elements and machinery of non-coding RNAs: toward their taxonomy.
Tetsuro Hirose, Yuichiro Mishima, Yukihide Tomari

EMBO Rep· May 2014

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miR-1 and miR-206 regulate angiogenesis by modulating VegfA expression in zebrafish.
Carlos Stahlhut, Yajaira Suárez, Jun Lu, Yuichiro Mishima, Antonio J Giraldez

Development· December 2012

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Widespread roles of microRNAs during zebrafish development and beyond.
Yuichiro Mishima

Dev Growth Differ· January 2012

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Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish.
Yuichiro Mishima, Akira Fukao, Tomoyoshi Kishimoto, Hiroshi Sakamoto, Toshinobu Fujiwara

Proc Natl Acad Sci U S A· January 2012

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A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity.
Daniel Cifuentes, Huiling Xue, David W Taylor, Heather Patnode, Yuichiro Mishima

Science· June 2010

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DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish.
Yasuaki Takeda, Yuichiro Mishima, Toshinobu Fujiwara, Hiroshi Sakamoto, Kunio Inoue

PLoS One· October 2009

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Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.
Yuichiro Mishima, Cei Abreu-Goodger, Alison A Staton, Carlos Stahlhut, Chong Shou

Genes Dev· March 2009

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miR-1-2 gets to the heart of the matter.
Yuichiro Mishima, Carlos Stahlhut, Antonio J Giraldez

Cell· April 2007

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Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430.
Yuichiro Mishima, Antonio J Giraldez, Yasuaki Takeda, Toshinobu Fujiwara, Hiroshi Sakamoto

Curr Biol· November 2006

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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.
Antonio J Giraldez, Yuichiro Mishima, Jason Rihel, Russell J Grocock, Stijn Van Dongen

Science· April 2006

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