Publications by authors named "Yuning Cheng"

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Dysregulated circRNA-miRNA-mRNA networks reveal stage-specific mRNA expression changes in Parkinson's disease.
Yulan Gao, Konii Takenaka, Kristina Santucci, Grace Lindner, Si-Mei Xu, Yuning Cheng

Mol Brain· December 2025

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Computational methods for the analysis of long-read RNA-seq data.
Kristina Santucci, Yuning Cheng, Si-Mei Xu, Michael Janitz

Genomics· November 2025

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Hydrogel Enhanced Organoid Multidirectional Differentiation via Yap/Tead4 Mechanotransduction for Accelerated Tissue Regeneration.
Peng Luo, Yuning Cheng, Yuwen Luo, Nan Zhang, Jingjing Cao

ACS Appl Mater Interfaces· July 2025

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Discovery of Novel Protein-Coding and Long Non-coding Transcripts in Distinct Regions of the Human Brain.
Kristina Santucci, Yuning Cheng, Si-Mei Xu, Yulan Gao, Grace Lindner

J Mol Neurosci· March 2025

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Recent advances in investigation of circRNA/lncRNA-miRNA-mRNA networks through RNA sequencing data analysis.
Yulan Gao, Konii Takenaka, Si-Mei Xu, Yuning Cheng, Michael Janitz

Brief Funct Genomics· January 2025

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Enhancing novel isoform discovery: leveraging nanopore long-read sequencing and machine learning approaches.
Kristina Santucci, Yuning Cheng, Si-Mei Xu, Michael Janitz

Brief Funct Genomics· December 2024

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Urban Lake Health Assessment Based on the Synergistic Perspective of Water Environment and Social Service Functions.
Xueyuan Wang, Yuning Cheng

Glob Chall· October 2024

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Machine learning and related approaches in transcriptomics.
Yuning Cheng, Si-Mei Xu, Kristina Santucci, Grace Lindner, Michael Janitz

Biochem Biophys Res Commun· September 2024

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Enhanced pyroptosis induction with pore-forming gene delivery for osteosarcoma microenvironment reshaping.
Jing-Jun Nie, Bowen Zhang, Peng Luo, Maoguo Luo, Yuwen Luo, Yuning Cheng, Xiaoguang Cheng

Bioact Mater· August 2024

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Investigation of the Circular Transcriptome in Alzheimer's Disease Brain.
Yulan Gao, Si-Mei Xu, Yuning Cheng, Konii Takenaka, Grace Lindner

J Mol Neurosci· July 2024

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Comprehensive comparison of two models evaluating eco-environmental quality in Fangshan.
Fangqi Tan, Yuning Cheng, Yangyang Yuan, Xueyuan Wang, Boqing Fan

Heliyon· April 2024

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Recent advances in the investigation of fusion RNAs and their role in molecular pathology of cancer.
Si-Mei Xu, Yuning Cheng, Harry Fisher, Michael Janitz

Int J Biochem Cell Biol· March 2024

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Two-Dimensional Biodegradable Black Phosphorus Nanosheets Promote Large Full-Thickness Wound Healing through In Situ Regeneration Therapy.
Xueshan Bai, Renxian Wang, Xiaohua Hu, Qiang Dai, Jianxun Guo, Yuning Cheng

ACS Nano· January 2024

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Carboxypeptidase E is a prognostic biomarker co-expressed with osteoblastic genes in osteosarcoma.
Dafu Chen, Ben Wan, Yuning Cheng, Yuwen Luo, Xueshan Bai

PeerJ· September 2023

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A unique circular RNA expression pattern in the peripheral blood of myalgic encephalomyelitis/chronic fatigue syndrome patients.
Yuning Cheng, Si-Mei Xu, Konii Takenaka, Grace Lindner, Ashton Curry-Hyde

Gene· August 2023

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The transcription factor HBP1 promotes ferroptosis in tumor cells by regulating the UHRF1-CDO1 axis.
Ruixiang Yang, Yue Zhou, Tongjia Zhang, Shujie Wang, Jiyin Wang, Yuning Cheng

PLoS Biol· July 2023

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Kinome-wide CRISPR-Cas9 knockout screens revealed PLK1 as a therapeutic target for osteosarcoma.
Renxian Wang, Dingding Wang, Xueshan Bai, Jianxun Guo, Songxia Xia, Yuning Cheng

Cell Death Discov· July 2023

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HBP1 inhibits the development of type 2 diabetes mellitus through transcriptional activation of the gene.
Yuning Cheng, Ruixiang Yang, Yue Zhou, Jiyin Wang, Tongjia Zhang

Aging (Albany NY)· November 2022

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Methylation of HBP1 by PRMT1 promotes tumor progression by regulating actin cytoskeleton remodeling.
Jiyin Wang, Ruixiang Yang, Yuning Cheng, Yue Zhou, Tongjia Zhang

Oncogenesis· August 2022

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GP73-mediated secretion of AFP and GP73 promotes proliferation and metastasis of hepatocellular carcinoma cells.
Yujuan Liu, Jiyin Wang, Ruixiang Yang, Yuning Cheng, Yue Zhou

Oncogenesis· October 2021

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HBP1-mediated transcriptional repression of AFP inhibits hepatoma progression.
Zhengyi Cao, Yuning Cheng, Jiyin Wang, Yujuan Liu, Ruixiang Yang

J Exp Clin Cancer Res· April 2021

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Icaritin promotes apoptosis and inhibits proliferation by down-regulating AFP gene expression in hepatocellular carcinoma.
Hui Li, Yujuan Liu, Wei Jiang, Junhui Xue, Yuning Cheng

BMC Cancer· March 2021

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Acetylation of alpha-fetoprotein promotes hepatocellular carcinoma progression.
Junhui Xue, Zhengyi Cao, Yuning Cheng, Jiyin Wang, Yujuan Liu

Cancer Lett· February 2020

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Assessing performance of porous pavements and bioretention cells for stormwater management in response to probable climatic changes.
Mo Wang, Dongqing Zhang, Yuning Cheng, Soon Keat Tan

J Environ Manage· August 2019

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MDM2 promotes genome instability by ubiquitinating the transcription factor HBP1.
Zhengyi Cao, Junhui Xue, Yuning Cheng, Jiyin Wang, Yujuan Liu

Oncogene· June 2019

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