Publications by authors named "Yuriko Yamagata"

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TIFAB regulates the TIFA-TRAF6 signaling pathway involved in innate immunity by forming a heterodimer complex with TIFA.
Teruya Nakamura, Chiaki Ohyama, Madoka Sakamoto, Tsugumasa Toma, Hiroshi Tateishi, Yuriko Yamagata

Proc Natl Acad Sci U S A· March 2024

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Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Teruya Nakamura, Yukari Koga-Ogawa, Kana Fujimiya, Mami Chirifu, Masataka Goto, Yuriko Yamagata

FEBS Lett· July 2023

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Visualization of mutagenic nucleotide processing by MutT, a Nudix hydrolase.
Teruya Nakamura, Yuriko Yamagata

Proc Natl Acad Sci U S A· May 2022

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Molecular recognition of a single-chain Fv antibody specific for GA-pyridine, an advanced glycation end-product (AGE), elucidated using biophysical techniques and synthetic antigen analogues.
Yoshihiro Kobashigawa, Toshiya Ohara, Kosuke Morita, Yuya Toyota, Teruya Nakamura, Yuriko Yamagata

J Biochem· October 2021

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Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.
Teruya Nakamura, Kohtaro Okabe, Shogo Hirayama, Mami Chirifu, Shinji Ikemizu, Yuriko Yamagata

Nucleic Acids Res· July 2021

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Crystal Structures of Metallo-β-Lactamase (IMP-1) and Its D120E Mutant in Complexes with Citrate and the Inhibitory Effect of the Benzyl Group in Citrate Monobenzyl Ester.
Yoshihiro Yamaguchi, Koichi Kato, Yoshimi Ichimaru, Wanchun Jin, Misa Sakai, Yuriko Yamagata

J Med Chem· July 2021

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Diffraction structural biology - an introductory overview.
Atsushi Nakagawa, John R Helliwell, Yuriko Yamagata

Acta Crystallogr D Struct Biol· March 2021

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A Conformational Escape Reaction of HIV-1 against an Allosteric Integrase Inhibitor.
Tomofumi Nakamura, Teruya Nakamura, Masayuki Amano, Toshikazu Miyakawa, Yuriko Yamagata

J Virol· September 2020

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Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity.
Teruya Nakamura, Chie Hashikawa, Kohtaro Okabe, Yuya Yokote, Mami Chirifu, Yuriko Yamagata

Sci Rep· March 2020

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SIRT7 has a critical role in bone formation by regulating lysine acylation of SP7/Osterix.
Masatoshi Fukuda, Tatsuya Yoshizawa, Md Fazlul Karim, Shihab U Sobuz, Wataru Korogi, Yuriko Yamagata, Kazuya Yamagata

Nat Commun· July 2018

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Anammox Organism KSU-1 Expresses a Novel His/DOPA Ligated Cytochrome c.
Daisuke Hira, Ryuji Kitamura, Teruya Nakamura, Yuriko Yamagata, Kenji Furukawa

J Mol Biol· April 2018

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Structural and Kinetic Studies of the Human Nudix Hydrolase MTH1 Reveal the Mechanism for Its Broad Substrate Specificity.
Shaimaa Waz, Teruya Nakamura, Keisuke Hirata, Yukari Koga-Ogawa, Mami Chirifu, Yuriko Yamagata

J Biol Chem· February 2017

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Mechanism of the nucleotidyl-transfer reaction in DNA polymerase revealed by time-resolved protein crystallography.
Teruya Nakamura, Ye Zhao, Yuriko Yamagata, Yue-Jin Hua, Wei Yang

Biophysics (Nagoya-shi)· August 2016

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Crystal structure of IMP-2 metallo-β-lactamase from Acinetobacter spp.: comparison of active-site loop structures between IMP-1 and IMP-2.
Yoshihiro Yamaguchi, Satoshi Matsueda, Kazuyo Matsunaga, Nobutoshi Takashio, Sachiko Toma-Fukai, Yuriko Yamagata

Biol Pharm Bull· December 2015

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C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir.
Manabu Aoki, Hironori Hayashi, Ravikiran S Yedidi, Cuthbert D Martyr, Yuki Takamatsu, Yuriko Yamagata

J Virol· November 2015

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Crystal structure of family 4 uracil-DNA glycosylase from Sulfolobus tokodaii and a function of tyrosine 170 in DNA binding.
Akito Kawai, Shigesada Higuchi, Masaru Tsunoda, Kazuo T Nakamura, Yuriko Yamagata

FEBS Lett· September 2015

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Crystallization and preliminary X-ray analysis of human MTH1 with a homogeneous N-terminus.
Yukari Koga, Miyuki Inazato, Teruya Nakamura, Chie Hashikawa, Mami Chirifu, Yuriko Yamagata

Acta Crystallogr Sect F Struct Biol Cryst Commun· January 2013

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Watching DNA polymerase η make a phosphodiester bond.
Teruya Nakamura, Ye Zhao, Yuriko Yamagata, Yue-jin Hua, Wei Yang

Nature· July 2012

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Human MTH3 (NUDT18) protein hydrolyzes oxidized forms of guanosine and deoxyguanosine diphosphates: comparison with MTH1 and MTH2.
Yasumitsu Takagi, Daiki Setoyama, Riyoko Ito, Hiroyuki Kamiya, Yuriko Yamagata

J Biol Chem· June 2012

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Preparation, crystallization and preliminary X-ray diffraction studies of the glycosylated form of human interleukin-23.
Takumi Shirouzono, Mami Chirifu, Chiharu Nakamura, Yuriko Yamagata, Shinji Ikemizu

Acta Crystallogr Sect F Struct Biol Cryst Commun· April 2012

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Crystallization and preliminary X-ray analysis of the subclass B3 metallo-β-lactamase SMB-1 that confers carbapenem resistance.
Jun-ichi Wachino, Yoshihiro Yamaguchi, Shigetarou Mori, Yuriko Yamagata, Yoshichika Arakawa

Acta Crystallogr Sect F Struct Biol Cryst Commun· March 2012

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Diverse substrate recognition and hydrolysis mechanisms of human NUDT5.
Takao Arimori, Haruhiko Tamaoki, Teruya Nakamura, Hiroyuki Kamiya, Shinji Ikemizu, Yuriko Yamagata

Nucleic Acids Res· November 2011

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[Mechanistic insight into hydrolysis of oxidized nucleotide diphosphates by human NUDT5].
Takao Arimori, Yuriko Yamagata

Fukuoka Igaku Zasshi· November 2011

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Cleavage of oxidized guanine nucleotide and ADP sugar by human NUDT5 protein.
Riyoko Ito, Mutsuo Sekiguchi, Daiki Setoyama, Yoshimichi Nakatsu, Yuriko Yamagata

J Biochem· June 2011

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Structural insights into differences in drug-binding selectivity between two forms of human alpha1-acid glycoprotein genetic variants, the A and F1*S forms.
Koji Nishi, Tomomi Ono, Teruya Nakamura, Naoko Fukunaga, Miyoko Izumi, Yuriko Yamagata

J Biol Chem· April 2011

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