Publications by authors named "Zerrin Isik"

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Multifaceted transcriptional reprogramming supports oxaliplatin chemoresistance in colorectal cancer cells.
Gizem Calibasi-Kocal, Hasan Kurter, Zerrin Isik

Anticancer Drugs· January 2026

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Editorial: Biomarkers and mechanisms of gastrointestinal diseases.
Zerrin Isik, Gizem Calibasi-Kocal, Omer Yilmaz

Front Genet· November 2024

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New treatment alternatives for primary and metastatic colorectal cancer by an integrated transcriptome and network analyses.
Caner Karaca, Ezgi Demir Karaman, Asim Leblebici, Hasan Kurter, Hulya Ellidokuz, Zerrin Isik

Sci Rep· April 2024

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In Silico Approach to Molecular Profiling of the Transition from Ovarian Epithelial Cells to Low-Grade Serous Ovarian Tumors for Targeted Therapeutic Insights.
Asim Leblebici, Ceren Sancar, Bahar Tercan, Zerrin Isik, Mehmet Emin Arayici

Curr Issues Mol Biol· February 2024

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Network neighborhood operates as a drug repositioning method for cancer treatment.
Ali Cüvitoğlu, Zerrin Isik

PeerJ· July 2023

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Multi-Omics Data Analysis Identifies Prognostic Biomarkers across Cancers.
Ezgi Demir Karaman, Zerrin Işık

Med Sci (Basel)· June 2023

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NMSDR: Drug repurposing approach based on transcriptome data and network module similarity.
Ülkü Ünsal, Ali Cüvitoğlu, Kemal Turhan, Zerrin Işık

Mol Inform· March 2023

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In silico identification of novel biomarkers for key players in transition from normal colon tissue to adenomatous polyps.
Zerrin Isik, Asım Leblebici, Ezgi Demir Karaman, Caner Karaca, Hulya Ellidokuz

PLoS One· May 2022

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Integrative Biological Network Analysis to Identify Shared Genes in Metabolic Disorders.
Samet Tenekeci, Zerrin Isik

IEEE/ACM Trans Comput Biol Bioinform· February 2022

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Identification of Leukemia Subtypes from Microscopic Images Using Convolutional Neural Network.
Nizar Ahmed, Altug Yigit, Zerrin Isik, Adil Alpkocak

Diagnostics (Basel)· August 2019

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Ubiquitin-Proteasome Axis, Especially Ubiquitin-Specific Protease-17 () Gene Family, is a Potential Target for Epithelial-Mesenchymal Transition in High-Grade Serous Ovarian Cancer.
Nuri Yildirim, Gizem Calibasi Kocal, Zerrin Isik, Bahadır Saatli, Ugur Saygili

Reprod Sci· June 2019

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Predicting drug synergy for precision medicine using network biology and machine learning.
Ali Cuvitoglu, Joseph X Zhou, Sui Huang, Zerrin Isik

J Bioinform Comput Biol· April 2019

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Integration of RNA-Seq and RPPA data for survival time prediction in cancer patients.
Zerrin Isik, Muserref Ece Ercan

Comput Biol Med· October 2017

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Systematic drug perturbations on cancer cells reveal diverse exit paths from proliferative state.
Joseph X Zhou, Zerrin Isik, Caide Xiao, Irit Rubin, Stuart A Kauffman

Oncotarget· February 2016

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Drug target prioritization by perturbed gene expression and network information.
Zerrin Isik, Christoph Baldow, Carlo Vittorio Cannistraci, Michael Schroeder

Sci Rep· November 2015

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Network information improves cancer outcome prediction.
Janine Roy, Christof Winter, Zerrin Isik, Michael Schroeder

Brief Bioinform· July 2014

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A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data.
Zerrin Isik, Tulin Ersahin, Volkan Atalay, Cevdet Aykanat, Rengul Cetin-Atalay

Mol Biosyst· October 2012

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