Publications by authors named "Zhao Hongyu"

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Hanseniaspora species can create a privileged niche for Oenococcus oeni during triple-strain simultaneous alcoholic-malolactic fermentation based on metabolomics analysis.
Yuzhu Zhao, Dingyi Wang, Kangjie Lou, Kai Hu, Ling He, Hongyu Zhao

Food Microbiol· April 2026

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Vertical thermal responses of young adults in campus rooftop spaces during winter in the severe cold regions of China.
Bo Wang, Wenlong Zhang, Yutong Guo, Guoqiang Ai, Hongyu Zhao

J Therm Biol· December 2025

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Cutting-edge drug resistance analysis of major cancers at single-cell level.
Tianyu Liu, Zhiyuan Cao, Wenxin Long, Hongyu Zhao

Cancer Treat Res Commun· December 2025

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Development and validation: a whole-tumor histogram model based on intravoxel incoherent motion diffusion-weighted imaging for diagnosing tumor deposits in rectal cancer.
Hongyu Zhao, Yantong Sun, Longxia Xu, Haojie Sun, Dmytro Pylypenko

Abdom Radiol (NY)· December 2025

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Improving polygenic risk prediction performance by integrating electronic health records through phenotype embedding.
Leqi Xu, Wangjie Zheng, Jiaqi Hu, Yingxin Lin, Jia Zhao, Hongyu Zhao

Am J Hum Genet· December 2025

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Interferon-stimulated gene GALNT2 restricts respiratory virus infections.
Wei Ran, Jinghong Yang, Shi Yu, Qingtao Hu, Yuqi He, Hongyu Zhao

Nat Microbiol· December 2025

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PERADIGM: Phenotype embedding similarity-based rare disease gene mapping.
Wangjie Zheng, Yuhan Xie, Jianlei Gu, Hongyu Li, Stefan Somlo, Hongyu Zhao

PLoS Genet· December 2025

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Taurodeoxycholic acid alleviates intestinal inflammation by modulating gut microbiota and TGR5-NF-kappaB axis in DSS-induced colitis.
Jiahui Gao, Lixiang Li, Shanshan Zhang, Hongyu Zhao, Bingcheng Feng

Int Immunopharmacol· December 2025

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Spatial dynamics of brain development and neuroinflammation.
Di Zhang, Leslie A Rubio Rodríguez-Kirby, Yingxin Lin, Wenqi Wang, Mengyi Song, Hongyu Zhao

Nature· November 2025

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Identification of Ermiao Fang Jiawei extract as potential synergist against fluconazole-resistant and in a vulvovaginal candidiasis model.
Jinyun Song, Xuxi Cheng, Jinghan Gao, Zihao Liang, Han Xue, Hongyu Zhao

Nat Prod Res· November 2025

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A unified framework for identification of cell-type-specific spatially variable genes in spatial transcriptomic studies.
Zhiwei Wang, Yeqin Zeng, Ziyue Tan, Yuheng Chen, Xinrui Huang, Hongyu Zhao

Proc Natl Acad Sci U S A· November 2025

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deficiency in islet β-cells up-regulates apoptosis of beta-cells and disturbs glucose metabolism in B6 mice.
Luyao Zhang, Yanpeng Xing, Pai Wang, Jianlei Gu, Jian Peng, Hongyu Zhao

Front Endocrinol (Lausanne)· November 2025

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Improving newborn screening accuracy through genome sequencing, targeted metabolomics, and machine learning.
Yuhan Xie, Gang Peng, Irina Tikhonova, Gregory Enns, Hongyu Zhao

BMC Med Genomics· November 2025

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Electric-Field Induced Unconventional Flexibility of MIL-Series MOFs and Its Application in Carbon Capture.
Xiangwei Huang, Kaifei Chen, Xingbo Wang, Deng Hu, Lina Zhang, Hongyu Zhao

Small· November 2025

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TCPGdb: A comprehensive T cell perturbation genomics database for identification of critical T cell regulators.
Chuanpeng Dong, Feifei Zhang, Kaiyuan Tang, Nipun Verma, Xinxin Zhu, Hongyu Zhao

Cancer Immunol Res· November 2025

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Molecular basis of SAM-AMP synthesis and degradation in the type III-B CRISPR-Cas system.
Benzhen Duan, Xiaohui Jin, Xiaoman An, Yang Xiao, Qianxi Yang, Hongyu Zhao

Nat Chem Biol· November 2025

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CircleBase V2: an eccDNA annotation platform across cancers and species.
Ling Wei, Leisheng Shi, Ning Wu, Hongyu Zhao, Zibaguli Wubulikasimu

Nucleic Acids Res· November 2025

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Recessive genomic and phenotypic variation in consanguineous families with cerebral palsy.
Pritha Bisarad, Yung-Chun Wang, Peter T Skidmore, Carolina I Galaz-Montoya, Sara A Lewis, Hongyu Zhao

medRxiv· November 2025

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A β-SiN/HA composite materials with biomimetic mineralized CaCO coating promote angiogenesis and bone regeneration through immunomodulation.
Andi Guo, Hongyu Zhao, Yixuan Zhao, Wei Lin, Shuanjiang Guo, Hongyu Xing

Biomater Adv· November 2025

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The SNHG3/miR-148a-3p axis-mediated high expression of DNMT1 is correlated with poor prognosis and tumor immune infiltration in hepatocellular carcinoma.
Ninghua Yao, Ganling Qu, Yumeng Shi, Huajie Miao, Gaojia Sun, Hongyu Zhao

J Gastrointest Oncol· October 2025

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Radiomics-based machine learning for glioma grade classification: a multicenter study with SHapley Additive exPlanations interpretability analysis.
Yumeng Shi, Wei Jiang, Li Zhou, Yu Shi, Xinran Ji, Hongyu Zhao

Transl Cancer Res· October 2025

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scGPD: single-cell informed gene panel design for targeted spatial transcriptomics.
Yunshan Guo, Jia Zhao, Rui B Chang, Hongyu Zhao

bioRxiv· October 2025

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Beyond the Genotype: A Multi-Omic Analysis of APOEe4's Role in Alzheimer's Disease.
Yaroslav Markov, Ahana Priyanka, Leqi Xu, Weiwei Wang, Kyra Thrush-Evensen, Hongyu Zhao

bioRxiv· October 2025

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VISTA Uncovers Missing Gene Expression and Spatial-induced Information for Spatial Transcriptomic Data Analysis.
Tianyu Liu, Yingxin Lin, Xiao Luo, Yizhou Sun, Hongyu Zhao

Res Sq· October 2025

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Inferring spatial single-cell-level interactions through interpreting cell state and niche correlations learned by self-supervised graph transformer.
Xiao Xiao, Le Zhang, Hongyu Zhao, Zuoheng Wang

bioRxiv· September 2025

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