Publications by authors named "Zhenjun Hu"

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Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation.
Dileep Kishore, Gabriel Birzu, Zhenjun Hu, Charles DeLisi, Kirill S Korolev

mSystems· August 2023

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EZH2 inhibitor GSK343 inhibits sepsis-induced intestinal disorders.
Dongyou Yue, Zhiying Wang, Yongan Yang, Zhenjun Hu, Ganping Luo

Exp Ther Med· May 2021

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Using VisANT to Analyze Networks.
Zhenjun Hu

Curr Protoc Bioinformatics· July 2016

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A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer.
Hsiao-Rong Chen, David H Sherr, Zhenjun Hu, Charles DeLisi

BMC Med Genomics· July 2016

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Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.
Brian R Granger, Yi-Chien Chang, Yan Wang, Charles DeLisi, Daniel Segrè, Zhenjun Hu

PLoS Comput Biol· April 2016

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Mutated Pathways as a Guide to Adjuvant Therapy Treatments for Breast Cancer.
Yang Liu, Zhenjun Hu, Charles DeLisi

Mol Cancer Ther· January 2016

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COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps.
Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P Anton, Simon Kasif

Nucleic Acids Res· January 2016

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Evaluation and integration of cancer gene classifiers: identification and ranking of plausible drivers.
Yang Liu, Feng Tian, Zhenjun Hu, Charles DeLisi

Sci Rep· May 2015

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Identification of collaborative driver pathways in breast cancer.
Yang Liu, Zhenjun Hu

BMC Genomics· July 2014

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Functional characterization of breast cancer using pathway profiles.
Feng Tian, Yajie Wang, Michael Seiler, Zhenjun Hu

BMC Med Genomics· July 2014

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The COMBREX project: design, methodology, and initial results.
Brian P Anton, Yi-Chien Chang, Peter Brown, Han-Pil Choi, Lina L Faller, Zhenjun Hu, Krista Rochussen, Shuang-Yong Xu, John Hunt, Jie Hu

PLoS Biol· March 2014

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VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.
Zhenjun Hu, Yi-Chien Chang, Yan Wang, Chia-Ling Huang, Yang Liu

Nucleic Acids Res· July 2013

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Analysis strategy of protein-protein interaction networks.
Zhenjun Hu

Methods Mol Biol· June 2013

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Gene set enrichment analysis: performance evaluation and usage guidelines.
Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi

Brief Bioinform· May 2012

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Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer.
Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang

PLoS Comput Biol· February 2012

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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Richard J Roberts, Yi-Chien Chang, Zhenjun Hu, John N Rachlin, Brian P Anton

Nucleic Acids Res· January 2011

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The BioPAX community standard for pathway data sharing.
Emek Demir, Michael P Cary, Suzanne Paley, Ken Fukuda, Christian Lemer, Zhenjun Hu, Huaiyu Mi, Olivier Hubaut, Michael Hucka

Nat Biotechnol· September 2010

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Identification of functional modules that correlate with phenotypic difference: the influence of network topology.
Jui-Hung Hung, Troy W Whitfield, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng

Genome Biol· August 2010

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Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network.
Bolan Linghu, Evan S Snitkin, Zhenjun Hu, Yu Xia, Charles Delisi

Genome Biol· February 2010

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VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.
Zhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck

Nucleic Acids Res· July 2009

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VisANT: an integrative framework for networks in systems biology.
Zhenjun Hu, Evan S Snitkin, Charles DeLisi

Brief Bioinform· July 2008

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Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA.
Tianhua Niu, Zhenjun Hu

Int J Bioinform Res Appl· January 2008

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VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Zhenjun Hu, David M Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Bolan Linghu, Joshua M Stuart

Nucleic Acids Res· July 2007

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Towards zoomable multidimensional maps of the cell.
Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart

Nat Biotechnol· May 2007

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Analyzing networks with VisANT.
Zhenjun Hu, Joseph Mellor, Charles DeLisi

Curr Protoc Bioinformatics· December 2004

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