Publications by authors named "Zhixiang Zuo"

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RMPore: a comprehensive database of single-molecule RNA modifications detected by Nanopore direct RNA sequencing.
Zhuobin Lin, Xiaoqiong Bao, Luowanyue Zhang, Yuantai Huang, Huiqin Li, Zhixiang Zuo

Nucleic Acids Res· November 2025

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RM2Target v2.0: an updated database for the target genes of writers, erasers, and readers of RNA modifications.
Xiaoqiong Bao, Qi Jiang, Weixuan Chen, Huiqin Li, Xuanye Li, Xiangyu Zuo, Zhixiang Zuo

Nucleic Acids Res· November 2025

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The Tumor-to-Endothelial Transfer of FTO Promotes Vascular Remodeling and Metastasis in Nasopharyngeal Carcinoma.
Chun Wu, Xuefei Liu, Liwen Gu, Jingru Lian, Yuting Wang, Zhixiang Zuo

Adv Sci (Weinh)· November 2025

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Comprehensive analysis of heterogeneity and cell-cell interactions in Crohn's disease reveals novel location-specific insights.
Jing Feng, Li-Na He, Ruchen Yao, Yuqi Qiao, Tian Yang, Zhixiang Zuo

J Adv Res· October 2025

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Porphyromonas gingivalis-induced HuR upregulation suppresses SLC39A10-derived hsa_circ_0057552 in esophageal squamous cell carcinoma.
Rui Yang, Bianli Gu, Qi Jiang, Linlin Shi, Shuoxuan Li, Zhixiang Zuo

Microbes Infect· October 2025

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theRNA: a curated knowledgebase of functional RNA therapeutics spanning diverse modalities and disease applications.
Yifan Zhou, Yongfei Hu, Luowanyue Zhang, Tianqing Wu, Suiyang Peng, Zhixiang Zuo

Nucleic Acids Res· October 2025

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CRESTA: a comprehensive transcriptome atlas for cellular response to external stressors.
Hongge Wang, Weiping Mu, Xiaoqiong Bao, Luowanyue Zhang, Yuxi Xie, Zhixiang Zuo

Nucleic Acids Res· September 2025

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Unveiling familial aggregation of nasopharyngeal carcinoma: Insights from oral microbiome dysbiosis.
Ying Liao, Xia-Ting Tong, Ting Zhou, Wen-Qiong Xue, Tong-Min Wang, Zhi-Xiang Zuo

Cell Rep Med· March 2025

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Deep learning prioritizes cancer mutations that alter protein nucleocytoplasmic shuttling to drive tumorigenesis.
Yongqiang Zheng, Kai Yu, Jin-Fei Lin, Zhuoran Liang, Qingfeng Zhang, Zhi-Xiang Zuo

Nat Commun· March 2025

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Zinc nanoparticles from oral supplements accumulate in renal tumours and stimulate antitumour immune responses.
Xin Zeng, Zhenzhu Wang, An Zhao, Yiqi Wu, Zongping Wang, Zhixiang Zuo

Nat Mater· February 2025

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m6A2Circ: A comprehensive database for decoding the regulatory relationship between m6A modification and circular RNA.
Yongtian Li, Bianli Gu, Lixia Ma, Li-Na He, Xiaoqiong Bao, Zhixiang Zuo

Comput Struct Biotechnol J· February 2025

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RMVar 2.0: an updated database of functional variants in RNA modifications.
Yuantai Huang, Luowanyue Zhang, Weiping Mu, Mohan Zheng, Xiaoqiong Bao, Zhixiang Zuo

Nucleic Acids Res· January 2025

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RPS 2.0: an updated database of RNAs involved in liquid-liquid phase separation.
Yongxin He, Xiaoqiong Bao, Tianjian Chen, Qi Jiang, Luowanyue Zhang, Zhixiang Zuo

Nucleic Acids Res· January 2025

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Integrated analysis of single-cell and bulk transcriptomes uncovers clinically relevant molecular subtypes in human prostate cancer.
Tao Ding, Lina He, Guowen Lin, Lei Xu, Yanjun Zhu, Zhixiang Zuo

Chin J Cancer Res· January 2025

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M6Allele: a toolkit for detection of allele-specific RNA N6-methyladenosine modifications.
Yin Zhang, Lin Tang, Shengyao Zhi, Bosu Hu, Zhixiang Zuo

Gigascience· January 2025

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Abnormal Cellular Populations Shape Thymic Epithelial Tumor Heterogeneity and Anti-Tumor by Blocking Metabolic Interactions in Organoids.
Xuefei Liu, Changchun Wang, Yueyu Huang, Qiaoli Lv, Chang Yu, Zhixiang Zuo

Adv Sci (Weinh)· November 2024

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Targeting the PDE3B-cAMP-autophagy axis prevents liver injury in long-term supercooling liver preservation.
Xingyuan Jiao, Yihu Li, Zhihang Chen, Qi Zhang, Rui He, Zhixiang Zuo

Sci Transl Med· November 2024

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FTO-mediated DSP mA demethylation promotes an aggressive subtype of growth hormone-secreting pituitary neuroendocrine tumors.
Yunzhi Zou, Xiaoqiong Bao, Depei Li, Zhen Ye, Rong Xiang, Zhixiang Zuo

Mol Cancer· September 2024

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AStruct: detection of allele-specific RNA secondary structure in structuromic probing data.
Qingru Xu, Xiaoqiong Bao, Zhuobin Lin, Lin Tang, Li-Na He, Zhixiang Zuo

BMC Bioinformatics· March 2024

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Single-cell transcriptomic analysis deciphers heterogenous cancer stem-like cells in colorectal cancer and their organ-specific metastasis.
Rui Li, Xuefei Liu, Xudong Huang, Di Zhang, Ziming Chen, Zhixiang Zuo

Gut· February 2024

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BioTreasury: a community-based repository enabling indexing and rating of bioinformatics tools.
Qi Zhao, Xin Zhou, Jingxing Wu, Jieyi Cai, Xiaoqiong Bao, Zhixiang Zuo

Sci China Life Sci· February 2024

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Super-enhancer RNA mA promotes local chromatin accessibility and oncogene transcription in pancreatic ductal adenocarcinoma.
Rui Li, Hongzhe Zhao, Xudong Huang, Jialiang Zhang, Ruihong Bai, Zhixiang Zuo

Nat Genet· December 2023

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FTO up-regulation induced by MYC suppresses tumour progression in Epstein-Barr virus-associated gastric cancer.
Yun-Yun Xu, Ting Li, Ao Shen, Xiao-Qiong Bao, Jin-Fei Lin, Zhi-Xiang Zuo

Clin Transl Med· December 2023

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p53-responsive CMBL reprograms glucose metabolism and suppresses cancer development by destabilizing phosphofructokinase PFKP.
Yingdan Huang, Chen Xiong, Chunmeng Wang, Jun Deng, Zhixiang Zuo

Cell Rep· November 2023

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CSTF2 mediated mRNA N-methyladenosine modification drives pancreatic ductal adenocarcinoma mA subtypes.
Yanfen Zheng, Xingyang Li, Shuang Deng, Hongzhe Zhao, Ying Ye, Zhixiang Zuo

Nat Commun· October 2023

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