Publications by authors named "Zhuo-Xing Shi"

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High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing.
Zhuo-Xing Shi, Zhi-Chao Chen, Jia-Yong Zhong, Kun-Hua Hu, Ying-Feng Zheng, Ying Chen, Shang-Qian Xie, Xiao-Chen Bo, Feng Luo, Chong Tang

Nat Commun· May 2023

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Analyzing cell-type-specific isoform expression using IsoDiffR and long-read single-cell RNA sequencing.
Hu Chen, Ye Qian, Qi Dai, Ying-Feng Zheng, Zhen-Cang Zheng, Zhuo-Xing Shi

Bioinformatics· December 2025

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Dynamic transition of Tregs to cytotoxic phenotype amid systemic inflammation in Graves' ophthalmopathy.
Zhong Liu, Shu-Rui Ke, Zhuo-Xing Shi, Ming Zhou, Li Sun, Hui-Shi Wang

JCI Insight· November 2024

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Single-Cell Transcriptomic Analysis Reveals Dynamic Cellular Processes in Corneal Epithelium During Wound Healing in Cynomolgus Monkeys.
Ming Zhou, Zhuo-Xing Shi, Zhong Liu, Shu-Rui Ke, Chao-Yang Wang

Invest Ophthalmol Vis Sci· September 2024

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Precision DNA methylation typing via hierarchical clustering of Nanopore current signals and attention-based neural network.
Qi Dai, Hu Chen, Wen-Jing Yi, Jia-Ning Zhao, Wei Zhang, Zhuo-Xing Shi

Brief Bioinform· September 2024

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High-throughput single-molecule long-read RNA sequencing analysis of tissue-specific genes and isoforms in lettuce (Lactuca sativa L.).
Zhuo-Xing Shi, Lei Xiang, Hai-Ming Zhao, Lang-Qi Yang, Zhi-Chao Chen

Commun Biol· July 2024

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Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Mouse Corneal Epithelial Cells.
Zhao-Jing Lu, Jin-Guo Ye, Dong-Liang Wang, Meng-Ke Li, Qi-Kai Zhang, Zhuo-Xing Shi

Invest Ophthalmol Vis Sci· March 2023

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