Publications by authors named "ZiLin Ren"

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PLMABFW: A deep learning framework for predicting Antibody-Antigen interactions using protein language model.
Yongbing Chen, Qianyi Jia, Xinyue Jia, Zhiguo Fu, Pingping Sun, Zilin Ren

J Bioinform Comput Biol· December 2025

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Mechano-Locking Strategy for Broad-Spectrum SARS-CoV-2 Neutralization.
Yang Ye, Shijie Chen, Yixiang Zhang, Tongtong Zhang, Tailin Liao, Zilin Ren

Small· November 2025

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Integrating genomic epidemiology and deep mutational scanning data for prevalence forecasting of SARS-CoV-2 Omicron lineages.
Zhong-Yi Lei, Xiao-Min Zhang, Jia-Lu Han, Ji-Guo Xue, Jia-Yi Xu, Zi-Lin Ren

PLoS One· November 2025

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CRISPR-Cas9-Targeted Nanopore Sequencing for STR Typing.
Ting-Ting Yang, Jia-Rong Zhang, Zi-Han Xie, Zi-Lin Ren, Meng-Yang Zhao

Electrophoresis· November 2025

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Multi-layered engineering of Aspergillus terreus enhances biosynthesis of the plant-derived fungicide physcion.
Zilin Ren, Yingying Xue, Ning Xu, Dandan Feng, Ce Geng

Microb Cell Fact· November 2025

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A T cell-based ubiquitin-mediated mRNA vaccine provides cross-protection against H1N1 and B influenza viruses in mice.
Yaxin Di, Ziliang Wang, Zilin Ren, Haixin Huang, Songhui Yang

Curr Res Microb Sci· September 2025

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Mining UDP-Glucosyltransferases to Develop High-Efficiency Production Strategies for Emodin Glucosides.
Yongsong Wu, Ning Xu, Yingying Xue, Zilin Ren, Dan Liu

J Agric Food Chem· August 2025

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Refined qingkailing attenuates reactive astrocytes and glial scar formation after ischemia stroke via the EGFR/PLCγ pathway.
Zi-Lin Ren, Chu-Xin Zhang, Yu-Xiao Zheng, Cong-Ai Chen, Dan-Chen

Phytomedicine· July 2025

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Huang-Lian-Jie-Du decoction inhibits CD4+ T cell infiltration into CNS in MCAO rats by regulating BBB.
Congai Chen, Changxiang Li, Xin Lan, Zilin Ren, Yuxiao Zheng

Phytomedicine· June 2025

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Mechanisms of pulmonary fibrosis and lung cancer induced by chronic PM exposure: Focus on the airway epithelial barrier and epithelial-mesenchymal transition.
Yuyu Shi, Qi Shao, Zilin Ren, Guojiao Shang, Jinhua Han

Ecotoxicol Environ Saf· June 2025

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Multifunctional cytochrome P450 orchestrates radical cleavage and non-radical cyclization in 5-oxaindolizidine biosynthesis.
Kaijin Zhang, Jingxian Sun, Wencai Song, Junyu Liu, Chuanteng Ma, Zilin Ren

Chem Sci· June 2025

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T cell interactions with microglia in immune-inflammatory processes of ischemic stroke.
Yuxiao Zheng, Zilin Ren, Ying Liu, Juntang Yan, Congai Chen

Neural Regen Res· May 2025

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N-terminal PEGylation enhances organophosphorus hydrolase catalysis for a promising fast and long-acting prophylactic candidate.
Ming Ma, Yanan Zhai, Qiantong Jin, Dan Wang, Shunye Wang, Zilin Ren

J Hazard Mater· May 2025

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Astrocyte-neuron metabolic crosstalk in ischaemic stroke.
Zi-Lin Ren, Xin Lan, Jia-Lin Cheng, Yu-Xiao Zheng, Cong-Ai Chen

Neurochem Int· May 2025

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The H5N6 Virus Containing Internal Genes From H9N2 Exhibits Enhanced Pathogenicity and Transmissibility.
Manlin He, Lina Liu, Jinglei Hu, Zhenjun Wang, Zhendong Guo, Wenhao Ren, Zilin Ren

Transbound Emerg Dis· April 2025

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Rapid sequencing and identification for 18-STRs long amplicon panel using portable devices and nanopore sequencer.
Jiarong Zhang, Tingting Yang, Zihan Xie, Zilin Ren, Linyu Shi

Genomics· January 2025

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Chemical characterization of Siraitia grosvenorii granules and their efficacy and mechanism of action on PM2.5-induced acute lung injury.
Qi Shao, Yan Zhao, YuYu Shi, Fafeng Cheng, ZeHan Zhang, ZiLin Ren

Ecotoxicol Environ Saf· January 2025

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Characteristics and filtering of low-frequency artificial short deletion variations based on nanopore sequencing.
Fuqiang Ye, Juanjuan Zhu, Xiaomin Zhang, Jiarong Zhang, Zihan Xie, Zilin Ren

Gigascience· January 2025

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DeepPFP: a multi-task-aware architecture for protein function prediction.
Han Wang, Zilin Ren, Jinghong Sun, Yongbing Chen, Xiaochen Bo

Brief Bioinform· November 2024

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The self-assembled nanoparticle-based multi-epitope influenza mRNA vaccine elicits protective immunity against H1N1 and B influenza viruses in mice.
Yaxin Di, Chenchao Zhang, Zilin Ren, Renyue Jiang, Jiafeng Tang

Front Immunol· October 2024

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Nanopore sequencing of forensic short tandem repeats using QNome of Qitan Technology.
Ting-Ting Yang, Jia-Rong Zhang, Zi-Han Xie, Zi-Lin Ren, Jiang-Wei Yan

Electrophoresis· September 2024

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NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm.
Zilin Ren, Jiarong Zhang, Yixiang Zhang, Tingting Yang, Pingping Sun

Brief Bioinform· September 2024

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A benchmark for evaluation of structure-based online tools for antibody-antigen binding affinity.
Jiayi Xu, Jianting Gong, Xiaochen Bo, Yigang Tong, Zilin Ren

Biophys Chem· August 2024

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CodonBERT: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
Zilin Ren, Lili Jiang, Yaxin Di, Dufei Zhang, Jianli Gong

Bioinformatics· July 2024

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THPLM: a sequence-based deep learning framework for protein stability changes prediction upon point variations using pretrained protein language model.
Jianting Gong, Lili Jiang, Yongbing Chen, Yixiang Zhang, Xue Li, Zilin Ren

Bioinformatics· November 2023

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