PubHawk
Nat Methods December 2019 PMID 31570887

ilastik: interactive machine learning for (bio)image analysis.

Stuart Berg, Dominik Kutra, Thorben Kroeger, Christoph N Straehle, Bernhard X Kausler, Carsten Haubold, Martin Schiegg, Janez Ales, Thorsten Beier, Markus Rudy, Kemal Eren, Jaime I Cervantes, Buote Xu, Fynn Beuttenmueller, Adrian Wolny

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Mentions

37
Peak: 7 in Oct 2019
across 4 sources since Oct 2019

Extended reach

183,044
potential audience

Total likes

195

Video views

22,631

Mentions per month

Oct 2019 – Apr 2023

Where it's discussed

  • X / Twitter27 posts
  • News4 articles
  • Blogs4 articles
  • YouTube2 videos

AI synopsis

What people are saying

The discussions reveal a positive perception of ilastik, with mentions of it bringing machine learning to users without extensive computational skills, thus increasing accessibility. Words like 'exciting research' and references to 'pre-defined workflows' emphasize both enthusiasm and practical relevance, while the tone suggests a belief in its potential to impact bioimage analysis significantly.

AgreementModerate agreement

Most discussions recognize ilastik as a useful and accessible tool for bioimage analysis, showing general support for its value.

InterestHigh interest

Comments frequently mention excitement about its features and potential, indicating high curiosity and engagement.

EngagementModerate engagement

Many posts discuss specific aspects like workflows and applications, reflecting active involvement.

ImpactModerate impact

Several discussions highlight its significance for bioinformatics and imaging fields, suggesting moderate recognition of its influence.

Abstract in brief

  • ilastik is a user-friendly, interactive machine learning tool designed for bioimage analysis, enabling users without advanced computational skills to perform tasks like segmentation, classification, counting, and tracking.
  • It allows users to customize workflows by providing sparse training annotations, and it can handle complex data, including 3D, time series, and multi-channel images, processing large datasets efficiently.
  • After training, ilastik workflows can be easily applied to new data via command line, and detailed case studies and performance discussions are provided to guide users.
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Top posts

Most liked on X and Bluesky
ShorterLab
@ShorterLab · X

ilastik: interactive machine learning for (bio)image analysis: https://t.co/35NyPpSq0x

Dec 3, 2019 · 9 likes · 5 shares · 12,114 followers View post →
Emerging Topics in Artificial Intelligence 2024
@ETAIconference · X

Countdown to #ETAI2021! We can't help ourselves from taking a sneak peak at one of our invited speakers Anna Kreshuk @ilastik_team exciting research: "ilastik: interactive machine learning for (bio)image analysis" in @naturemethods https://t.co/9fyWNr9vDh

Jan 20, 2021 · 6 likes · 2 shares · 596 followers View post →
ML-Bioinfo-CEITEC
@MCeitec · X

@HHMIJanelia @embl present ilastik, an interactive tool that brings #ML-based (bio)image analysis to users without substantial computational expertise. It contains pre-defined workflows for image segmentation, object classification, counting and tracking. https://t.co/DACvNVHBmA

Jun 4, 2020 · 6 likes · 2 shares · 337 followers View post →
BioDecoded
@BioDecoded · X

ilastik: interactive machine learning for (bio)image analysis | Nature Methods https://t.co/IkaEK8GQfF #bioimage #bioinformatics https://t.co/GwZAFLlhTv

Oct 2, 2019 · 4 likes · 1 share · 8,891 followers View post →
Robert Haase
@haesleinhuepf · X

@rita_strack Awesome!

Mar 23, 2020 · 3 likes · 2 shares · 11,773 followers View post →
Aiswarya Rajeevan
@LovenAiswarya · X

ilastik: interactive machine learning for (bio)image analysis . @2basetech @taxionthego @Deep_In_Depth @DeepLearn007 @DeepMindAI @SwissCognitive @into_AI @machine_ml . https://t.co/orKcAbcemT #ArtificialIntelligence #DeepLearning #MachineLearning

Oct 1, 2019 · 2 likes · 2 shares · 757 followers View post →

All mentions

Margaretta Colangelo
@realmargaretta · X

RT @ETAIconference: Countdown to #ETAI2021! We can't help ourselves from taking a sneak peak at one of our invited speakers Anna Kreshuk @…

Jan 22, 2021 · 2 shares · 2,687 followers View post →
Machine Learning Bot
@ML_Tweet_Bot · X

RT @ETAIconference: Countdown to #ETAI2021! We can't help ourselves from taking a sneak peak at one of our invited speakers Anna Kreshuk @…

Jan 20, 2021 · 2 shares · 10,135 followers View post →
Emerging Topics in Artificial Intelligence 2024
@ETAIconference · X

Countdown to #ETAI2021! We can't help ourselves from taking a sneak peak at one of our invited speakers Anna Kreshuk @ilastik_team exciting research: "ilastik: interactive machine learning for (bio)image analysis" in @naturemethods https://t.co/9fyWNr9vDh

Jan 20, 2021 · 6 likes · 2 shares · 596 followers View post →
Machine Learning Bot
@ML_Tweet_Bot · X

RT @Roby41262525: ilastik: interactive machine learning for (bio)image analysis #Learning via https://t.co/vBsHOsqluy https://t.co/hyOAGpyT…

Jan 9, 2021 · 1 share · 10,135 followers View post →
KuHappen
@KuHappen · X

ilastik: interactive machine learning for (bio)image analysis #Learning via https://t.co/vBsHOsqluy https://t.co/hyOAGpyT9o

Jan 9, 2021 · 1 share · 695 followers View post →
Machine Learning Bot
@ML_Tweet_Bot · X

RT @romeroreimer: ilastik: interactive machine learning for (bio)image analysis https://t.co/GRF1JGruYU

Jan 9, 2021 · 1 share · 10,135 followers View post →
Reimer Agustín Romero
@romeroreimer · X

ilastik: interactive machine learning for (bio)image analysis https://t.co/GRF1JGruYU

Jan 9, 2021 · 1 share · 445 followers View post →
Zuzana Dostálová
@ZuzanaDostlov2 · X

RT @MCeitec: @HHMIJanelia @embl present ilastik, an interactive tool that brings #ML-based (bio)image analysis to users without substantial…

Jun 18, 2020 · 2 shares · 117 followers View post →
EMBL
@embl · X

RT @MCeitec: @HHMIJanelia @embl present ilastik, an interactive tool that brings #ML-based (bio)image analysis to users without substantial…

Jun 4, 2020 · 2 shares · 67,062 followers View post →
ML-Bioinfo-CEITEC
@MCeitec · X

@HHMIJanelia @embl present ilastik, an interactive tool that brings #ML-based (bio)image analysis to users without substantial computational expertise. It contains pre-defined workflows for image segmentation, object classification, counting and tracking. https://t.co/DACvNVHBmA

Jun 4, 2020 · 6 likes · 2 shares · 337 followers View post →
BioloGeek
@Nico_BioloGeek · X

RT @haesleinhuepf: @rita_strack Awesome!

Mar 24, 2020 · 2 shares · 1,730 followers View post →
Xusan Yang
@xusanyoung · X

RT @haesleinhuepf: @rita_strack Awesome!

Mar 23, 2020 · 2 shares · 157 followers View post →
Robert Haase
@haesleinhuepf · X

@rita_strack Awesome!

Mar 23, 2020 · 3 likes · 2 shares · 11,773 followers View post →
Nam Chul Kim
@nck1992 · X

RT @ShorterLab: ilastik: interactive machine learning for (bio)image analysis: https://t.co/35NyPpSq0x

Dec 4, 2019 · 5 shares · 138 followers View post →
Xiaojing Sui
@Xiaojing_Sui · X

RT @ShorterLab: ilastik: interactive machine learning for (bio)image analysis: https://t.co/35NyPpSq0x

Dec 3, 2019 · 5 shares · 451 followers View post →
Gan Lab
@LiGanLab · X

RT @ShorterLab: ilastik: interactive machine learning for (bio)image analysis: https://t.co/35NyPpSq0x

Dec 3, 2019 · 5 shares · 4,061 followers View post →
Shorter Lab Members
@ShorterLabGroup · X

RT @ShorterLab: ilastik: interactive machine learning for (bio)image analysis: https://t.co/35NyPpSq0x

Dec 3, 2019 · 5 shares · 3,213 followers View post →
ShorterLab
@ShorterLab · X

ilastik: interactive machine learning for (bio)image analysis: https://t.co/35NyPpSq0x

Dec 3, 2019 · 9 likes · 5 shares · 12,114 followers View post →
Randy Heiland
@rheiland · X

RT @nekvalous: ilastik: interactive machine learning for (bio)image analysis https://t.co/0oeAo2prtZ

Dec 2, 2019 · 1 share · 791 followers View post →
Nektarios Valous
@nekvalous · X

ilastik: interactive machine learning for (bio)image analysis https://t.co/0oeAo2prtZ

Dec 2, 2019 · 1 share · 1,954 followers View post →
PubMedCurator
@PubMedCurator · X

ilastik: interactive machine learning for (bio)image analysis. https://t.co/OjgssbbO2T

Oct 17, 2019 · 137 followers View post →
Santchi
@SantchiWeb · X

RT @BioDecoded: ilastik: interactive machine learning for (bio)image analysis | Nature Methods https://t.co/IkaEK8GQfF #bioimage #bioinfor…

Oct 2, 2019 · 1 share · 7,289 followers View post →
BioDecoded
@BioDecoded · X

ilastik: interactive machine learning for (bio)image analysis | Nature Methods https://t.co/IkaEK8GQfF #bioimage #bioinformatics https://t.co/GwZAFLlhTv

Oct 2, 2019 · 4 likes · 1 share · 8,891 followers View post →
Ian hoffecker
@ian_hoffecker · X

ilastik: interactive machine learning for (bio)image analysis https://t.co/nwBu0vk5Aa https://t.co/wElZddULH9

Oct 1, 2019 · 1,966 followers View post →
Andy Horvitz
@AndyHorvitz · X

RT @LovenAiswarya: ilastik: interactive machine learning for (bio)image analysis . @2basetech @taxionthego @Deep_In_Depth @DeepLearn007 @De…

Oct 1, 2019 · 2 shares · 1,532 followers View post →
Olivia
@_OliviaBot · X

RT @LovenAiswarya: ilastik: interactive machine learning for (bio)image analysis . @2basetech @taxionthego @Deep_In_Depth @DeepLearn007 @De…

Oct 1, 2019 · 2 shares · 1,002 followers View post →
Aiswarya Rajeevan
@LovenAiswarya · X

ilastik: interactive machine learning for (bio)image analysis . @2basetech @taxionthego @Deep_In_Depth @DeepLearn007 @DeepMindAI @SwissCognitive @into_AI @machine_ml . https://t.co/orKcAbcemT #ArtificialIntelligence #DeepLearning #MachineLearning

Oct 1, 2019 · 2 likes · 2 shares · 757 followers View post →