STAR Protoc September 2020 PMID 32935086

Protocol for Genome-Scale Reconstruction and Melanogenesis Analysis of .

Wheaton L Schroeder, Rajib Saha

Mentions

7
Peak: 7 in Nov 2020
across 2 sources since Nov 2020

Extended reach

1,079
potential audience

Total likes

1

Video views

395

Mentions per month

Nov 2020

All 7 dated mentions so far are from Nov 2020.

Where it's discussed

  • X / Twitter5 posts
  • YouTube2 videos

AI synopsis

What people are saying

The discussions frequently cite specific tools like OptFill and mention their applications in reconstructing genome-scale models of organisms such as E. dermatitidis, emphasizing the technical innovations with phrases like 'overcomes current limitations' and 'applied to melanized fungi.' The tone demonstrates enthusiasm and a focus on advancing metabolic modeling, reflecting both high interest and engagement, while the overall impact is viewed as progressive but not revolutionary.

AgreementModerate agreement

Most discussions highlight the usefulness and advancements provided by the OptFill method, indicating general support.

InterestHigh interest

Posts focus on sharing videos and publications about the research, demonstrating high curiosity and academic engagement.

EngagementHigh engagement

Many posts encourage further exploration through links and describe applications like pigment modeling and metabolic reconstruction, showing deep involvement.

ImpactModerate impact

While the posts promote awareness and understanding, they mainly serve educational purposes rather than immediate transformative insights.

Abstract in brief

  • This text discusses a study on BR, a highly tolerant fungus with a small genome, used as a model to understand melanogenesis (pigment production) and carotenoid synthesis.
  • Researchers reconstructed a genome-scale model called Ede2091 to better understand BR's metabolism and performed a shadow price analysis to evaluate pigment production.
  • A key part of this process involved using OptFill, a new gap-filling method that helps complete metabolic models, especially for organisms with limited metabolic data, ensuring a more accurate and conservative reconstruction.]

Top posts

Most liked on X and Bluesky
Dr. Wheaton L. Schroeder, PhD
@BowTie_PhD · X

A short overview of my #OptFill work for @AIChECAST10 can be found on @YouTube for those that are interested! See how we identify futile cycles, speed GSM reconstruction, and have applied it to melanized fungi! https://t.co/LaTH5BokxT

Nov 15, 2020 · 177 followers View post →
Dr. Wheaton L. Schroeder, PhD
@BowTie_PhD · X

Check out my work through @YouTube, and if you find in interesting, take a look at our publications on this work: https://t.co/DQ49HoEibA, https://t.co/OFEaqB4SSE! https://t.co/nuyK0znZF0

Nov 9, 2020 · 177 followers View post →
Dr. Wheaton L. Schroeder, PhD
@BowTie_PhD · X

Check out this short presentation on @YouTube, and see my publications on this work through the following links: https://t.co/tN2z6Zdt2M, https://t.co/OFEaqB4SSE, and https://t.co/DQ49HoEibA. https://t.co/pUWN7w6MwN

Nov 9, 2020 · 177 followers View post →
SSbioUNL
@SSbio_UNL · X

Learn about how we reconstructed a Genome-Scale Model (GSM) of the under-studied organism E. dermatitidis, presented by @WheatonLSchroe1 on @YouTube used to study defensive pigments, as well as exploring its potential as a model melanin-producing system! https://t.co/WwRjxn5F1J

Nov 6, 2020 · 77 followers View post →

All mentions

Dr. Wheaton L. Schroeder, PhD
@BowTie_PhD · X

A short overview of my #OptFill work for @AIChECAST10 can be found on @YouTube for those that are interested! See how we identify futile cycles, speed GSM reconstruction, and have applied it to melanized fungi! https://t.co/LaTH5BokxT

Nov 15, 2020 · 177 followers View post →
Dr. Wheaton L. Schroeder, PhD
@BowTie_PhD · X

Check out my work through @YouTube, and if you find in interesting, take a look at our publications on this work: https://t.co/DQ49HoEibA, https://t.co/OFEaqB4SSE! https://t.co/nuyK0znZF0

Nov 9, 2020 · 177 followers View post →
Dr. Wheaton L. Schroeder, PhD
@BowTie_PhD · X

Check out this short presentation on @YouTube, and see my publications on this work through the following links: https://t.co/tN2z6Zdt2M, https://t.co/OFEaqB4SSE, and https://t.co/DQ49HoEibA. https://t.co/pUWN7w6MwN

Nov 9, 2020 · 177 followers View post →
SSbioUNL
@SSbio_UNL · X

Learn more about how the OptFill tool by @WheatonLSchroe1 overcomes current limitations of gapfinding algorithms and how it is useful for reconstructing models of under-studied systems on @YouTube! https://t.co/wMIXFOBt3n

Nov 6, 2020 · 77 followers View post →
SSbioUNL
@SSbio_UNL · X

Learn about how we reconstructed a Genome-Scale Model (GSM) of the under-studied organism E. dermatitidis, presented by @WheatonLSchroe1 on @YouTube used to study defensive pigments, as well as exploring its potential as a model melanin-producing system! https://t.co/WwRjxn5F1J

Nov 6, 2020 · 77 followers View post →