Genome Biol August 2021 PMID 34446078

Technology dictates algorithms: recent developments in read alignment.

Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal, Harry Taegyun Yang, Victor Xue, Sergey Knyazev, Benjamin D Singer, Brunilda Balliu, David Koslicki, Pavel Skums, Alex Zelikovsky, Can Alkan

Mentions

149
Peak: 62 in Sep 2021
across 2 sources since Mar 2020

Extended reach

469,902
potential audience

Total likes

385

Video views

825

Mentions per month

Mar 2020 – Sep 2024

Where it's discussed

  • X / Twitter147 posts
  • YouTube2 videos

AI synopsis

What people are saying

Several posts highlight key aspects of the research, mentioning the adaptation of algorithms over the years and the evaluation of numerous methods. Phrases like 'fascinating to see how sequencing technologies shape algorithms' and 'new review paper by @mealser' indicate engagement and interest, while the repetition of the publication’s title reflects its importance in ongoing discussions, like in 'New review paper' and 'Review of read alignment tools.' Overall, the tone conveys enthusiasm and relevance in the field of bioinformatics.

AgreementModerate agreement

Most discussions reflect a supportive stance towards the publication's findings, suggesting a consensus on the importance of the topic.

InterestHigh interest

There is a high level of curiosity and excitement about the advancements in read alignment and algorithm development.

EngagementModerate engagement

While many posts reference the publication, few delve deeply into its methodologies or implications, resulting in moderate engagement.

ImpactHigh impact

Users perceive that the developments covered in the publication hold significant potential for future research and applications in genomic analysis.

Abstract in brief

  • Technology has significantly influenced the development of algorithms for read alignment, which is crucial for genomic analysis.
  • The text surveys 107 alignment methods, focusing on the algorithmic foundations and methodologies for both short and long sequencing reads.
  • It includes an evaluation of 11 specific read aligners to showcase their performance in terms of speed and efficiency, highlighting how these algorithms are adapted to meet the needs of different biological applications.

Top posts

Most liked on X and Bluesky
Mohammed Alser
@mealser · X

1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on developments in read alignment algorithms since 1988 (my birth

Sep 7, 2021 · 202 likes · 75 shares · 497 followers View post →
Genome Biology
@GenomeBiology · X

Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods published since 1988, comparing different approaches. They look at computational efficiency and speed. Most tools use hashing. https://t.co/MP9MrEdn4S https://t.co/ZaAoz3VSuH

Aug 27, 2021 · 113 likes · 37 shares · 89,996 followers View post →
Bilkent CompGen
@BilkentCompGen · X

New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU @DavidKoslicki @Alexz81744967 et al. https://t.co/zlt3rxXoLC

Aug 27, 2021 · 24 likes · 5 shares · 643 followers View post →
Shuai Li
@lishuai800 · X

@tangming2005 maybe this paper. https://t.co/5TH3PdFwBU

Oct 4, 2021 · 13 likes · 2 shares · 151 followers View post →
BioDecoded
@BioDecoded · X

Technology dictates algorithms: recent developments in read alignment | Genome Biology https://t.co/U6Y8ZFDFj3 #Bioinformatics https://t.co/Inpk51Ej5x

Sep 2, 2021 · 6 likes · 1 share · 8,895 followers View post →
Kristoffer Sahlin
@krsahlin · X

We believe that our seeding technique constitutes a novel class of dynamic-sized fuzzy seeds to previous classifications in short read alignment (Table 1 in Alser et al., https://t.co/9n0CnMTNrl). [7/9]

Feb 1, 2022 · 4 likes · 1,024 followers View post →

All mentions

Mohammed Alser
@mealser · X

RT @SAFARI_ETH_CMU: Don't miss the premiere of @mealser's invited talk on "Analyzing Genomes via Efficient HW/SW Co-Design" @KhalifaUni. T…

Feb 3, 2023 · 1 share · 496 followers View post →
SAFARI Research Group
@SAFARI_ETH_CMU · X

Don't miss the premiere of @mealser's invited talk on "Analyzing Genomes via Efficient HW/SW Co-Design" @KhalifaUni. The talk describes our ongoing journey in enabling efficient genome analysis. Premiere Monday Feb 6 4PM CET: https://t.co/SFarDaioMY @_onurmutlu_ @ETH_en

Feb 3, 2023 · 1 like · 1 share · 2,309 followers View post →
Serghei Mangul #UkraineWillWin
@serghei_mangul · X

@pashadag I am sure @mealser knows the answer! We also should have in our review about read alignment https://t.co/iwIGXGFCTL

Dec 7, 2022 · 1 like · 1,634 followers View post →
Katie Sandlin
@KatieMSandlin · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Nov 28, 2022 · 75 shares · 2,621 followers View post →
AAa
@albertlazarola · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Aug 15, 2022 · 75 shares · 113 followers View post →
Filipe Mulonde
@filipe_mulonde · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Aug 15, 2022 · 75 shares · 2,466 followers View post →
Kristoffer Sahlin
@krsahlin · X

We believe that our seeding technique constitutes a novel class of dynamic-sized fuzzy seeds to previous classifications in short read alignment (Table 1 in Alser et al., https://t.co/9n0CnMTNrl). [7/9]

Feb 1, 2022 · 4 likes · 1,024 followers View post →
الحمدلله
@cUonhoffwO0ob7D · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Nov 5, 2021 · 75 shares · 28 followers View post →
Jorge “Coco” Del-Aguila
@Coco_Lucho2 · X

RT @lishuai800: @tangming2005 maybe this paper. https://t.co/5TH3PdFwBU

Oct 5, 2021 · 2 shares · 117 followers View post →
Ming "Tommy" Tang
@tangming2005 · X

RT @lishuai800: @tangming2005 maybe this paper. https://t.co/5TH3PdFwBU

Oct 5, 2021 · 2 shares · 41,051 followers View post →
Shuai Li
@lishuai800 · X

@tangming2005 maybe this paper. https://t.co/5TH3PdFwBU

Oct 4, 2021 · 13 likes · 2 shares · 151 followers View post →
Fernan Aguero
@fernan_aguero · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 1,059 followers View post →
Sergio Castañeda
@scastanedag1 · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 653 followers View post →
Eduardo A. Sagredo
@esagredo · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 339 followers View post →
Ivan K. Lukic
@iklukic · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 1,504 followers View post →
David Requena, PhD
@davidr_requena · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 881 followers View post →
Simón Villanueva Corrales
@Sivico26 · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 229 followers View post →
Salamanca-Pinzón S.G.
@sagisapi · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 3, 2021 · 75 shares · 584 followers View post →
Nick Wong AU/MEL
@methylnick · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 2, 2021 · 75 shares · 3,420 followers View post →
Adawiah Zainal
@ruruadra · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 2, 2021 · 75 shares · 230 followers View post →
Alejandro Montenegro
@aemonten · X

Another https://t.co/wSKrSuel4q

Oct 2, 2021 · 9,044 followers View post →
OncoPapers
@sccancerres · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Oct 2, 2021 · 75 shares · 307 followers View post →
Georgios Pappas Jr
@georgiospappas · X

Technology dictates algorithms: recent developments in read alignment | Genome Biology | Full Text https://t.co/Aas8YUsFwU

Sep 14, 2021 · 37 followers View post →
khom
@khomgm · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 13, 2021 · 75 shares · 67 followers View post →
antisense.
@razoralign · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 13, 2021 · 75 shares · 15,950 followers View post →
Adrien Leger
@AdrienLeger2 · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 10, 2021 · 75 shares · 863 followers View post →
Francois Sabot (@francoissabot.bsky.social)
@francois_sabot · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 10, 2021 · 75 shares · 889 followers View post →
dridk
@dridk · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 9, 2021 · 75 shares · 1,050 followers View post →
Huwenbo Shi (時胡文博)
@shihuwenbo · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 9, 2021 · 75 shares · 808 followers View post →
Claudia Kasper
@suspigt · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 9, 2021 · 75 shares · 499 followers View post →
Davide Cirillo
@Davide__Cirillo · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 9, 2021 · 75 shares · 647 followers View post →
Danang Crysnanto
@crdanang · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 9, 2021 · 75 shares · 466 followers View post →
Jialei Duan
@jlduan · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 9, 2021 · 75 shares · 148 followers View post →
長谷武志
@TakeshiHase · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 248 followers View post →
TKS
@HomareZuki · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 551 followers View post →
Kazuma Uesaka
@kazumachack · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 1,451 followers View post →
Milton Tan
@mtanichthys · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 5,091 followers View post →
Keith Robison
@OmicsOmicsBlog · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 9,980 followers View post →
Abhiman Saraswathi
@abhimans · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 245 followers View post →
Peinan Zhao
@zhaoppeinan · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 27 followers View post →
AlfonsoValencia alfonsovalencia.bsky.social
@Alfons_Valencia · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 7,688 followers View post →
Taco Jesse
@TJesse62 · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 1,733 followers View post →
MΛRCOS COLEBROOK
@MColebrook · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 1,428 followers View post →
Martin Smith
@Trevor87Smith · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 276 followers View post →
Bioinformatics Trends 
@BinfoTrends · X

RT @ChihHorngKuo: [review] Technology dictates algorithms: recent developments in read alignment. #bioinformatics https://t.co/9qZ3T4CXfh

Sep 8, 2021 · 2 shares · 8,156 followers View post →
CompChemBio Bot
@CompChemBioBot · X

RT @ChihHorngKuo: [review] Technology dictates algorithms: recent developments in read alignment. #bioinformatics https://t.co/9qZ3T4CXfh

Sep 8, 2021 · 2 shares · 2,761 followers View post →
Chih-Horng Kuo (郭志鴻)
@ChihHorngKuo · X

[review] Technology dictates algorithms: recent developments in read alignment. #bioinformatics https://t.co/9qZ3T4CXfh

Sep 8, 2021 · 3 likes · 2 shares · 1,398 followers View post →
JeanDelmotte
@DrStagiaire · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 358 followers View post →
Xavier F.
@xf_grely · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 161 followers View post →
Wayne
@Fomightez · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 253 followers View post →
Georg Otto
@georg_otto · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 58 followers View post →
Yanxian Li
@li_yanxian · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 442 followers View post →
Martin Correa
@martinrafco · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 232 followers View post →
Rishikesh Gupta, Ph.D.
@its_rkgupta · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 324 followers View post →
Sean Simmons
@seankenneths · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 701 followers View post →
Saran Pankaew
@SaranPankaew · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 149 followers View post →
Gustavo Ybazeta
@ybazetag · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 440 followers View post →
Ashwini Kumar Sharma,PhD
@aksbioinfo · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 197 followers View post →
Alfred_Hou
@hou_alfred · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 55 followers View post →
Nour Almadhoun Alserr
@nmadhoun · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 96 followers View post →
wentao zhang
@wentaozhang8 · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 617 followers View post →
Fotis E. Psomopoulos
@fopsom · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 8, 2021 · 75 shares · 1,087 followers View post →
Chetanya Pandya
@ChetanyaPandya · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 268 followers View post →
James Ferguson
@Psy_Fer_ · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 3,806 followers View post →
Renato Puga
@renatopuga · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 55 followers View post →
Prasath Lab CCHMC
@PrasathLab · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 1,088 followers View post →
Ming "Tommy" Tang
@tangming2005 · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 41,051 followers View post →
CFlores-Lab
@LabCflores · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 607 followers View post →
Alexander Wittenberg
@AW_NGS · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 5,010 followers View post →
Giulia Guidi
@giuliaguidi · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 2,440 followers View post →
SAFARI Research Group
@SAFARI_ETH_CMU · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 2,320 followers View post →
Hamim Zafar
@Quasarzafar · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 553 followers View post →
Dan Browne
@DRBFX · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 404 followers View post →
Kristoffer Sahlin
@krsahlin · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 1,024 followers View post →
Mehmet Koyutürk
@koyuturkm · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 317 followers View post →
Can Alkan
@calkan_cs · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 1,982 followers View post →
Mukesh || ಮುಖೇಶ್
@muku_kr · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 121 followers View post →
Li Song
@mourisl · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 1,509 followers View post →
Onur Mutlu
@_onurmutlu_ · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 8,190 followers View post →
Serghei Mangul #UkraineWillWin
@serghei_mangul · X

RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…

Sep 7, 2021 · 75 shares · 1,634 followers View post →
Mohammed Alser
@mealser · X

1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on developments in read alignment algorithms since 1988 (my birth

Sep 7, 2021 · 202 likes · 75 shares · 497 followers View post →
Thunder Pearson-Sanders
@SandersSeanergy · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Sep 4, 2021 · 37 shares · 485 followers View post →
CompChemBio Bot
@CompChemBioBot · X

RT @BioDecoded: Technology dictates algorithms: recent developments in read alignment | Genome Biology https://t.co/U6Y8ZFDFj3 #Bioinforma…

Sep 2, 2021 · 1 share · 2,761 followers View post →
BioDecoded
@BioDecoded · X

Technology dictates algorithms: recent developments in read alignment | Genome Biology https://t.co/U6Y8ZFDFj3 #Bioinformatics https://t.co/Inpk51Ej5x

Sep 2, 2021 · 6 likes · 1 share · 8,895 followers View post →
elaina graham
@perilousUnknown · X

RT @yokadzaki: Technology dictates algorithms: recent developments in read alignment https://t.co/HQuCGHrnDp

Aug 31, 2021 · 2 shares · 534 followers View post →
Medical_Diagnostic707
@diagnostic707 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 30, 2021 · 37 shares · 22 followers View post →
Ilnam Kang
@ilnam_kang · X

RT @yokadzaki: Technology dictates algorithms: recent developments in read alignment https://t.co/HQuCGHrnDp

Aug 30, 2021 · 2 shares · 235 followers View post →
Yusuke Okazaki
@yokadzaki · X

Technology dictates algorithms: recent developments in read alignment https://t.co/HQuCGHrnDp

Aug 30, 2021 · 2 shares · 799 followers View post →
JeanDelmotte
@DrStagiaire · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 30, 2021 · 37 shares · 358 followers View post →
SAFARI Research Group
@SAFARI_ETH_CMU · X

RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…

Aug 29, 2021 · 5 shares · 2,320 followers View post →
Unai López de Heredia
@UnaiLpezdeHere1 · X

RT @jsantoyo: Technology dictates algorithms: recent developments in read alignment. #SequenceData #ReadsAligners #Benchmarking #Bioinforma…

Aug 29, 2021 · 2 shares · 162 followers View post →
ashish (@acgt01@genomic.social)
@acgt01 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 29, 2021 · 37 shares · 734 followers View post →
CompChemBio Bot
@CompChemBioBot · X

RT @jsantoyo: Technology dictates algorithms: recent developments in read alignment. #SequenceData #ReadsAligners #Benchmarking #Bioinforma…

Aug 29, 2021 · 2 shares · 2,761 followers View post →
Javier Santoyo
@jsantoyo · X

Technology dictates algorithms: recent developments in read alignment. #SequenceData #ReadsAligners #Benchmarking #Bioinformatics https://t.co/JToHckBrpa @GenomeBiology

Aug 29, 2021 · 3 likes · 2 shares · 6,132 followers View post →
SAFARI Research Group
@SAFARI_ETH_CMU · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 29, 2021 · 37 shares · 2,320 followers View post →
Tae Hoon Kim
@taehoonkim · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 782 followers View post →
Onur Mutlu
@_onurmutlu_ · X

RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…

Aug 28, 2021 · 5 shares · 8,190 followers View post →
Mohammed Alser
@mealser · X

RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…

Aug 28, 2021 · 5 shares · 497 followers View post →
Mohammed Alser
@mealser · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 497 followers View post →
Francisco J Ruiz-Ruano
@fjruizruano · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 680 followers View post →
Fuzzy Caterpillar
@lpmor22_ · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 208 followers View post →
Eduardo Pareja
@eduardopareja · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 567 followers View post →
NGS Bioinformatics
@ngsbioinfo · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 6,003 followers View post →
Xavier F.
@xf_grely · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 161 followers View post →
Wei Shen 沈 伟
@shenwei356 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 1,623 followers View post →
Karel Břinda
@KarelBrinda · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 1,186 followers View post →
WeiTing Lin(GR15
@weitinglin66 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 1,291 followers View post →
Yulong Niu
@YulongNiu · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 28, 2021 · 37 shares · 71 followers View post →
Joshua Ho
@joshuawkho · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 1,046 followers View post →
Dr. Viraj Muthye (He/Him)
@awesome_biology · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 556 followers View post →
Kashish Chetal
@kashish34 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 74 followers View post →
Anshul Kundaje (anshulkundaje@bluesky)
@anshulkundaje · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 26,971 followers View post →
ColdKingdom
@ShulanTian · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 140 followers View post →
Prasath Lab CCHMC
@PrasathLab · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 1,088 followers View post →
Nour Almadhoun Alserr
@nmadhoun · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 96 followers View post →
Son Nguyen
@snguyen268 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 506 followers View post →
Braden Tierney
@BradenTierney · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 533 followers View post →
Andreas Bremges
@abremges · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 761 followers View post →
Onur Mutlu
@_onurmutlu_ · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 8,190 followers View post →
Anupam Gautam
@Anupam__Gautam · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 124 followers View post →
Danang Crysnanto
@crdanang · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 466 followers View post →
Fernando Gonzalez-Candelas
@fgonzalef · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 1,395 followers View post →
Francois Sabot (@francoissabot.bsky.social)
@francois_sabot · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 889 followers View post →
Eric Minwei Liu
@EricM_Liu · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 933 followers View post →
Wengang Zhang
@WZ19911 · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 68 followers View post →
Can Alkan
@calkan_cs · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 1,982 followers View post →
Li Song
@mourisl · X

RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…

Aug 27, 2021 · 37 shares · 1,509 followers View post →
Genome Biology
@GenomeBiology · X

Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods published since 1988, comparing different approaches. They look at computational efficiency and speed. Most tools use hashing. https://t.co/MP9MrEdn4S https://t.co/ZaAoz3VSuH

Aug 27, 2021 · 113 likes · 37 shares · 89,996 followers View post →
Huwenbo Shi (時胡文博)
@shihuwenbo · X

RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…

Aug 27, 2021 · 5 shares · 808 followers View post →
David Koslicki
@DavidKoslicki · X

RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…

Aug 27, 2021 · 5 shares · 466 followers View post →
Bilkent CompGen
@BilkentCompGen · X

New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU @DavidKoslicki @Alexz81744967 et al. https://t.co/zlt3rxXoLC

Aug 27, 2021 · 24 likes · 5 shares · 643 followers View post →
MyJournals
@myjournals · X

Technology dictates algorithms: recent developments in read alignment https://t.co/ypHpKsRBJM

Aug 26, 2021 · 556 followers View post →
CompChemBio Bot
@CompChemBioBot · X

RT @MColebrook: Technology dictates #algorithms: Recent developments in read #alignment https://t.co/yRLSmlXvoC > @LabCflores @adrmunozb @…

Oct 14, 2020 · 1 share · 2,761 followers View post →
MΛRCOS COLEBROOK
@MColebrook · X

Technology dictates #algorithms: Recent developments in read #alignment https://t.co/yRLSmlXvoC > @LabCflores @adrmunozb @joluroga @cpgonzal #Genomics #Bioinformatics https://t.co/W1gse8Sypi

Oct 14, 2020 · 2 likes · 1 share · 1,428 followers View post →
BlackPhysicists
@BlackPhysicists · X

Technology dictates algorithms: Recent developments in read alignment. (arXiv:2003.00110v3 [https://t.co/2TYhE9CBpz] UPDATED) https://t.co/3ef8VsdmTh #biophysics

Jul 13, 2020 · 25,137 followers View post →
Microbiome Bot
@MicrobiomeBot · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/x0lH9iJcwc

Jul 13, 2020 · 420 followers View post →
Literature Bot
@litscraper · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/GHAEl4B1UV

Jul 13, 2020 · 114 followers View post →
BioinfoPapers
@bioinfo_papers · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/cWixnelQOe

Jul 12, 2020 · 943 followers View post →
Microbiome Bot
@MicrobiomeBot · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/BewYnv6DsJ

Apr 16, 2020 · 420 followers View post →
BioinfoPapers
@bioinfo_papers · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/xwqRvGtZ0H

Apr 15, 2020 · 943 followers View post →
Mohammed Alser
@mealser · X

RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…

Mar 20, 2020 · 5 shares · 497 followers View post →
ETH CS Department
@CSatETH · X

RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…

Mar 18, 2020 · 5 shares · 6,077 followers View post →
Onur Mutlu
@_onurmutlu_ · X

RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…

Mar 18, 2020 · 5 shares · 8,190 followers View post →
Can Alkan
@calkan_cs · X

RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…

Mar 18, 2020 · 5 shares · 1,982 followers View post →
Metagenomics Papers
@metagenomic_lit · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/DhqJe2GjCH

Mar 3, 2020 · 1 like · 3,700 followers View post →
BioinfoPapers
@bioinfo_papers · X

Technology dictates algorithms: Recent developments in read alignment https://t.co/fBCclo4GXV

Mar 3, 2020 · 1 like · 943 followers View post →
Quantitative Biology
@BioPapers · X

Technology dictates algorithms: Recent developments in read alignment. https://t.co/f7yQ8dMAa2

Mar 2, 2020 · 1,515 followers View post →