Technology dictates algorithms: recent developments in read alignment.
Mohammed Alser, Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal, Harry Taegyun Yang, Victor Xue, Sergey Knyazev, Benjamin D Singer, Brunilda Balliu, David Koslicki, Pavel Skums, Alex Zelikovsky, Can Alkan
August 2021 Genome BiolSynopsis of Social media discussions
Several posts highlight key aspects of the research, mentioning the adaptation of algorithms over the years and the evaluation of numerous methods. Phrases like 'fascinating to see how sequencing technologies shape algorithms' and 'new review paper by @mealser' indicate engagement and interest, while the repetition of the publication’s title reflects its importance in ongoing discussions, like in 'New review paper' and 'Review of read alignment tools.' Overall, the tone conveys enthusiasm and relevance in the field of bioinformatics.
Agreement
Moderate agreementMost discussions reflect a supportive stance towards the publication's findings, suggesting a consensus on the importance of the topic.
Interest
High level of interestThere is a high level of curiosity and excitement about the advancements in read alignment and algorithm development.
Engagement
Moderate level of engagementWhile many posts reference the publication, few delve deeply into its methodologies or implications, resulting in moderate engagement.
Impact
High level of impactUsers perceive that the developments covered in the publication hold significant potential for future research and applications in genomic analysis.
Social Mentions
YouTube
2 Videos
147 Posts
Metrics
Video Views
825
Total Likes
385
Extended Reach
469,902
Social Features
149
Timeline: Posts about article
Top Social Media Posts
Mohammed Alser
1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on developments in read alignment algorithms since 1988 (my birth
view full post
Genome Biology
Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods published since 1988, comparing different approaches. They look at computational efficiency and speed. Most tools use hashing. https://t.co/MP9MrEdn4S https://t.co/ZaAoz3VSuH
view full post
Bilkent CompGen
New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU @DavidKoslicki @Alexz81744967 et al. https://t.co/zlt3rxXoLC
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Shuai Li
@tangming2005 maybe this paper.
https://t.co/5TH3PdFwBU
view full post
BioDecoded
Technology dictates algorithms: recent developments in read alignment | Genome Biology
https://t.co/U6Y8ZFDFj3
#Bioinformatics https://t.co/Inpk51Ej5x
view full post
Posts referencing the article
Efficient Genome Analysis through Advanced Technology and Algorithms
This talk explores how modern computing technologies influence genomic analysis. It focuses on quick and accurate methods for read alignment, essential for personalized medicine and scientific discoveries. Gain insights into algorithm developments that enhance performance in biological applications.
February 6, 2023
546 views
Read Mapping Techniques in Genome Analysis and Algorithm Development
This video discusses read mapping, a key process in locating subsequences of a reference genome that align with read sequences while managing sequencing errors and genetic variations. Technology has notably influenced algorithms for read alignment, enhancing genomic analysis.
September 15, 2024
279 views
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RT @SAFARI_ETH_CMU: Don't miss the premiere of @mealser's invited talk on "Analyzing Genomes via Efficient HW/SW Co-Design" @KhalifaUni. T…
view full postFebruary 3, 2023
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SAFARI Research Group
@SAFARI_ETH_CMU (Twitter)Don't miss the premiere of @mealser's invited talk on "Analyzing Genomes via Efficient HW/SW Co-Design" @KhalifaUni. The talk describes our ongoing journey in enabling efficient genome analysis. Premiere Monday Feb 6 4PM CET: https://t.co/SFarDaioMY @_onurmutlu_ @ETH_en
view full postFebruary 3, 2023
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Serghei Mangul #UkraineWillWin
@serghei_mangul (Twitter)@pashadag I am sure @mealser knows the answer! We also should have in our review about read alignment https://t.co/iwIGXGFCTL
view full postDecember 7, 2022
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Katie Sandlin
@KatieMSandlin (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postNovember 28, 2022
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AAa
@albertlazarola (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postAugust 15, 2022
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Filipe Mulonde
@filipe_mulonde (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postAugust 15, 2022
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Kristoffer Sahlin
@krsahlin (Twitter)We believe that our seeding technique constitutes a novel class of dynamic-sized fuzzy seeds to previous classifications in short read alignment (Table 1 in Alser et al., https://t.co/9n0CnMTNrl). [7/9]
view full postFebruary 1, 2022
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الحمدلله
@cUonhoffwO0ob7D (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postNovember 5, 2021
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Jorge “Coco” Del-Aguila
@Coco_Lucho2 (Twitter)RT @lishuai800: @tangming2005 maybe this paper. https://t.co/5TH3PdFwBU
view full postOctober 5, 2021
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Ming "Tommy" Tang
@tangming2005 (Twitter)RT @lishuai800: @tangming2005 maybe this paper. https://t.co/5TH3PdFwBU
view full postOctober 5, 2021
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Shuai Li
@lishuai800 (Twitter)@tangming2005 maybe this paper. https://t.co/5TH3PdFwBU
view full postOctober 4, 2021
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Fernan Aguero
@fernan_aguero (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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Sergio Castañeda
@scastanedag1 (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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Eduardo A. Sagredo
@esagredo (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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Ivan K. Lukic
@iklukic (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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David Requena, PhD
@davidr_requena (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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Simón Villanueva Corrales
@Sivico26 (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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Salamanca-Pinzón S.G.
@sagisapi (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 3, 2021
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Nick Wong AU/MEL
@methylnick (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 2, 2021
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Adawiah Zainal
@ruruadra (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 2, 2021
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Alejandro Montenegro
@aemonten (Twitter)Another https://t.co/wSKrSuel4q
view full postOctober 2, 2021
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OncoPapers
@sccancerres (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postOctober 2, 2021
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Georgios Pappas Jr
@georgiospappas (Twitter)Technology dictates algorithms: recent developments in read alignment | Genome Biology | Full Text https://t.co/Aas8YUsFwU
view full postSeptember 14, 2021
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khom
@khomgm (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 13, 2021
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antisense.
@razoralign (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 13, 2021
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Adrien Leger
@AdrienLeger2 (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 10, 2021
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Francois Sabot (@francoissabot.bsky.social)
@francois_sabot (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 10, 2021
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@dridk (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 9, 2021
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Huwenbo Shi (時胡文博)
@shihuwenbo (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 9, 2021
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Claudia Kasper
@suspigt (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 9, 2021
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Davide Cirillo
@Davide__Cirillo (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 9, 2021
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Danang Crysnanto
@crdanang (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 9, 2021
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Jialei Duan
@jlduan (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 9, 2021
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長谷武志
@TakeshiHase (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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TKS
@HomareZuki (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Kazuma Uesaka
@kazumachack (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Milton Tan
@mtanichthys (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Keith Robison
@OmicsOmicsBlog (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Abhiman Saraswathi
@abhimans (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Peinan Zhao
@zhaoppeinan (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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AlfonsoValencia alfonsovalencia.bsky.social
@Alfons_Valencia (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Taco Jesse
@TJesse62 (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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MΛRCOS COLEBROOK
@MColebrook (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Martin Smith
@Trevor87Smith (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Bioinformatics Trends
@BinfoTrends (Twitter)RT @ChihHorngKuo: [review] Technology dictates algorithms: recent developments in read alignment. #bioinformatics https://t.co/9qZ3T4CXfh
view full postSeptember 8, 2021
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CompChemBio Bot
@CompChemBioBot (Twitter)RT @ChihHorngKuo: [review] Technology dictates algorithms: recent developments in read alignment. #bioinformatics https://t.co/9qZ3T4CXfh
view full postSeptember 8, 2021
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Chih-Horng Kuo (郭志鴻)
@ChihHorngKuo (Twitter)[review] Technology dictates algorithms: recent developments in read alignment. #bioinformatics https://t.co/9qZ3T4CXfh
view full postSeptember 8, 2021
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JeanDelmotte
@DrStagiaire (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Xavier F.
@xf_grely (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Wayne
@Fomightez (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Georg Otto
@georg_otto (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Yanxian Li
@li_yanxian (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Martin Correa
@martinrafco (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Rishikesh Gupta, Ph.D.
@its_rkgupta (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Sean Simmons
@seankenneths (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Saran Pankaew
@SaranPankaew (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Gustavo Ybazeta
@ybazetag (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Ashwini Kumar Sharma,PhD
@aksbioinfo (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Alfred_Hou
@hou_alfred (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Nour Almadhoun Alserr
@nmadhoun (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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wentao zhang
@wentaozhang8 (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Fotis E. Psomopoulos
@fopsom (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 8, 2021
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Chetanya Pandya
@ChetanyaPandya (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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James Ferguson
@Psy_Fer_ (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Renato Puga
@renatopuga (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Prasath Lab CCHMC
@PrasathLab (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Ming "Tommy" Tang
@tangming2005 (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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CFlores-Lab
@LabCflores (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Alexander Wittenberg
@AW_NGS (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Giulia Guidi
@giuliaguidi (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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SAFARI Research Group
@SAFARI_ETH_CMU (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Hamim Zafar
@Quasarzafar (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Dan Browne
@DRBFX (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Kristoffer Sahlin
@krsahlin (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Mehmet Koyutürk
@koyuturkm (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Can Alkan
@calkan_cs (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Mukesh || ಮುಖೇಶ್
@muku_kr (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Li Song
@mourisl (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Onur Mutlu
@_onurmutlu_ (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Serghei Mangul #UkraineWillWin
@serghei_mangul (Twitter)RT @mealser: 1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on de…
view full postSeptember 7, 2021
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Mohammed Alser
@mealser (Twitter)1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on developments in read alignment algorithms since 1988 (my birth
view full postSeptember 7, 2021
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Thunder Pearson-Sanders
@SandersSeanergy (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postSeptember 4, 2021
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CompChemBio Bot
@CompChemBioBot (Twitter)RT @BioDecoded: Technology dictates algorithms: recent developments in read alignment | Genome Biology https://t.co/U6Y8ZFDFj3 #Bioinforma…
view full postSeptember 2, 2021
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BioDecoded
@BioDecoded (Twitter)Technology dictates algorithms: recent developments in read alignment | Genome Biology https://t.co/U6Y8ZFDFj3 #Bioinformatics https://t.co/Inpk51Ej5x
view full postSeptember 2, 2021
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elaina graham
@perilousUnknown (Twitter)RT @yokadzaki: Technology dictates algorithms: recent developments in read alignment https://t.co/HQuCGHrnDp
view full postAugust 31, 2021
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Medical_Diagnostic707
@diagnostic707 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 30, 2021
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Ilnam Kang
@ilnam_kang (Twitter)RT @yokadzaki: Technology dictates algorithms: recent developments in read alignment https://t.co/HQuCGHrnDp
view full postAugust 30, 2021
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Yusuke Okazaki
@yokadzaki (Twitter)Technology dictates algorithms: recent developments in read alignment https://t.co/HQuCGHrnDp
view full postAugust 30, 2021
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JeanDelmotte
@DrStagiaire (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 30, 2021
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SAFARI Research Group
@SAFARI_ETH_CMU (Twitter)RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…
view full postAugust 29, 2021
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Unai López de Heredia
@UnaiLpezdeHere1 (Twitter)RT @jsantoyo: Technology dictates algorithms: recent developments in read alignment. #SequenceData #ReadsAligners #Benchmarking #Bioinforma…
view full postAugust 29, 2021
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ashish (@acgt01@genomic.social)
@acgt01 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 29, 2021
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CompChemBio Bot
@CompChemBioBot (Twitter)RT @jsantoyo: Technology dictates algorithms: recent developments in read alignment. #SequenceData #ReadsAligners #Benchmarking #Bioinforma…
view full postAugust 29, 2021
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Javier Santoyo
@jsantoyo (Twitter)Technology dictates algorithms: recent developments in read alignment. #SequenceData #ReadsAligners #Benchmarking #Bioinformatics https://t.co/JToHckBrpa @GenomeBiology
view full postAugust 29, 2021
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SAFARI Research Group
@SAFARI_ETH_CMU (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 29, 2021
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Tae Hoon Kim
@taehoonkim (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Onur Mutlu
@_onurmutlu_ (Twitter)RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…
view full postAugust 28, 2021
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Mohammed Alser
@mealser (Twitter)RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…
view full postAugust 28, 2021
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Mohammed Alser
@mealser (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Francisco J Ruiz-Ruano
@fjruizruano (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Fuzzy Caterpillar
@lpmor22_ (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Eduardo Pareja
@eduardopareja (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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NGS Bioinformatics
@ngsbioinfo (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Xavier F.
@xf_grely (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Wei Shen 沈 伟
@shenwei356 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Karel Břinda
@KarelBrinda (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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WeiTing Lin(GR15
@weitinglin66 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Yulong Niu
@YulongNiu (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 28, 2021
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Joshua Ho
@joshuawkho (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Dr. Viraj Muthye (He/Him)
@awesome_biology (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Kashish Chetal
@kashish34 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Anshul Kundaje (anshulkundaje@bluesky)
@anshulkundaje (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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ColdKingdom
@ShulanTian (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Prasath Lab CCHMC
@PrasathLab (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Nour Almadhoun Alserr
@nmadhoun (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Son Nguyen
@snguyen268 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Braden Tierney
@BradenTierney (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Andreas Bremges
@abremges (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Onur Mutlu
@_onurmutlu_ (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Anupam Gautam
@Anupam__Gautam (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Danang Crysnanto
@crdanang (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Fernando Gonzalez-Candelas
@fgonzalef (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Francois Sabot (@francoissabot.bsky.social)
@francois_sabot (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Eric Minwei Liu
@EricM_Liu (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Wengang Zhang
@WZ19911 (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Can Alkan
@calkan_cs (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Li Song
@mourisl (Twitter)RT @GenomeBiology: Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods pu…
view full postAugust 27, 2021
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Genome Biology
@GenomeBiology (Twitter)Review of read alignment tools from @mealser, @jnrotman, @_onurmutlu_ , @serghei_mangul & co. They assess 107 methods published since 1988, comparing different approaches. They look at computational efficiency and speed. Most tools use hashing. https://t.co/MP9MrEdn4S https://t.co/ZaAoz3VSuH
view full postAugust 27, 2021
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Huwenbo Shi (時胡文博)
@shihuwenbo (Twitter)RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…
view full postAugust 27, 2021
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David Koslicki
@DavidKoslicki (Twitter)RT @BilkentCompGen: New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU…
view full postAugust 27, 2021
5
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Bilkent CompGen
@BilkentCompGen (Twitter)New review paper by @mealser on alignment algorithms, in collaboration w/ @serghei_mangul @_onurmutlu_ @SAFARI_ETH_CMU @DavidKoslicki @Alexz81744967 et al. https://t.co/zlt3rxXoLC
view full postAugust 27, 2021
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MyJournals
@myjournals (Twitter)Technology dictates algorithms: recent developments in read alignment https://t.co/ypHpKsRBJM
view full postAugust 26, 2021
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CompChemBio Bot
@CompChemBioBot (Twitter)RT @MColebrook: Technology dictates #algorithms: Recent developments in read #alignment https://t.co/yRLSmlXvoC > @LabCflores @adrmunozb @…
view full postOctober 14, 2020
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MΛRCOS COLEBROOK
@MColebrook (Twitter)Technology dictates #algorithms: Recent developments in read #alignment https://t.co/yRLSmlXvoC > @LabCflores @adrmunozb @joluroga @cpgonzal #Genomics #Bioinformatics https://t.co/W1gse8Sypi
view full postOctober 14, 2020
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BlackPhysicists
@BlackPhysicists (Twitter)Technology dictates algorithms: Recent developments in read alignment. (arXiv:2003.00110v3 [https://t.co/2TYhE9CBpz] UPDATED) https://t.co/3ef8VsdmTh #biophysics
view full postJuly 13, 2020
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Microbiome Bot
@MicrobiomeBot (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/x0lH9iJcwc
view full postJuly 13, 2020
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Literature Bot
@litscraper (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/GHAEl4B1UV
view full postJuly 13, 2020
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BioinfoPapers
@bioinfo_papers (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/cWixnelQOe
view full postJuly 12, 2020
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Microbiome Bot
@MicrobiomeBot (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/BewYnv6DsJ
view full postApril 16, 2020
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BioinfoPapers
@bioinfo_papers (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/xwqRvGtZ0H
view full postApril 15, 2020
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Mohammed Alser
@mealser (Twitter)RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…
view full postMarch 20, 2020
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ETH CS Department
@CSatETH (Twitter)RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…
view full postMarch 18, 2020
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Onur Mutlu
@_onurmutlu_ (Twitter)RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…
view full postMarch 18, 2020
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Can Alkan
@calkan_cs (Twitter)RT @SAFARI_ETH_CMU: Our new preprint "Technology dictates algorithms: Recent developments in read alignment" is now online: https://t.co/I…
view full postMarch 18, 2020
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Metagenomics Papers
@metagenomic_lit (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/DhqJe2GjCH
view full postMarch 3, 2020
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BioinfoPapers
@bioinfo_papers (Twitter)Technology dictates algorithms: Recent developments in read alignment https://t.co/fBCclo4GXV
view full postMarch 3, 2020
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Quantitative Biology
@BioPapers (Twitter)Technology dictates algorithms: Recent developments in read alignment. https://t.co/f7yQ8dMAa2
view full postMarch 2, 2020
Abstract Synopsis
- Technology has significantly influenced the development of algorithms for read alignment, which is crucial for genomic analysis.
- The text surveys 107 alignment methods, focusing on the algorithmic foundations and methodologies for both short and long sequencing reads.
- It includes an evaluation of 11 specific read aligners to showcase their performance in terms of speed and efficiency, highlighting how these algorithms are adapted to meet the needs of different biological applications.
Mohammed Alser
@mealser (Twitter)