Genome Med May 2023 PMID 37158973

Comprehensive de novo mutation discovery with HiFi long-read sequencing.

Erdi Kucuk, Bart P G H van der Sanden, Luke O'Gorman, Michael Kwint, Ronny Derks, Aaron M Wenger, Christine Lambert, Shreyasee Chakraborty, Primo Baybayan, William J Rowell, Han G Brunner, Lisenka E L M Vissers, Alexander Hoischen, Christian Gilissen

Mentions

75
Peak: 31 in May 2023
across 3 sources since May 2023

Extended reach

123,749
potential audience

Total likes

127

Video views

20

Mentions per month

May 2023 – Nov 2023

Where it's discussed

  • News39 articles
  • X / Twitter35 posts
  • YouTube1 videos

AI synopsis

What people are saying

The discussions demonstrate strong interest and technical engagement, highlighted by phrases like 'comprehensive detection' and mentions of new sequencing platforms like 'Revio.' The tone suggests that the community views this research as an important technical step forward, with words like 'high accuracy' and 'systematic' emphasizing potential significance, though some comments maintain a cautious tone about immediate impact.

AgreementModerate agreement

Most posts recognize the significance of the research, with some explicitly endorsing its accuracy and advances in mutation detection.

InterestHigh interest

Discussions consistently highlight curiosity about the new sequencing technology and potential applications.

EngagementHigh engagement

Posts contain technical details, such as mentions of specific methods like 'de novo mutations' and 'high coverage trios,' indicating deep engagement.

ImpactModerate impact

While some posts suggest the research could influence future studies, limited direct claims of immediate impact result in a moderate impact score.

Abstract in brief

  • Long-read sequencing (LRS) was previously limited in detecting small genetic variants due to its high error rate, but the introduction of PacBio HiFi sequencing improves this capability, allowing for more accurate identification of de novo mutations (DNMs) in genetic studies.
  • In this study, researchers sequenced the genomes of parent-child trios using both PacBio HiFi LRS and Illumina short-read sequencing (SRS) and found a high concordance rate of 92% for small variants, although the concordance for other variant types like STRs and SVs was much lower.
  • The results showed a successful validation of a significant portion of small variants detected by HiFi LRS, with an

Top posts

Most liked on X and Bluesky
Alexander Hoischen
@ahoischen · X

Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant levels! Just the start to many more HiFi genomes - especially with our new Revio…@radboudumc @GeneticNijmegen https://t.co/Y8OAngw1m2

May 8, 2023 · 53 likes · 17 shares · 2,073 followers View post →
Bart van der Sanden
@Bart_vd_S · X

Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https://t.co/F3w7u5Ea2v

May 8, 2023 · 42 likes · 10 shares · 170 followers View post →
Javier Santoyo
@jsantoyo · X

Comprehensive de novo mutation discovery with HiFi long-read sequencing. #DeNovoMutations #SNVs #SVs #HiFi #LongRead @PacBio #Sequencing #LRS @GenomeMedicine https://t.co/HwOSGxzpkE

May 9, 2023 · 9 likes · 1 share · 6,104 followers View post →
PacBio
@PacBio · X

In this article from @gilissenc and @ahoischen, the authors evaluate the ability of #HiFisequencing to detect de novo mutations. The results show HiFi sequencing is capable of calling de novo mutations on all known variant levels with high accuracy. https://t.co/WHCWH4jCby https://t.co/fogXNvtYKg

Jul 19, 2023 · 8 likes · 44,962 followers View post →
Dale Yuzuki
@DaleYuzuki · X

#ASHG23 Hoischen: HiFi genomes (on Revio), Tier 2, unsolved mysteries. Case 1: severe sporadic disease, dysmorphic (hypertelorism). May 2023 paper: https://t.co/lSvdsekrjG 4 de novo "BND-calls" Chr 2 had a del-ins mutation. "Rainbow Reads" resolved. 90kb inserted.

Nov 2, 2023 · 8 likes · 5,655 followers View post →
Alexander Hoischen
@ahoischen · X

Come and see our great postdoc @Bart_vd_S explain details of our recent study https://t.co/IhG1pShXmw https://t.co/tkI5YeWByW

Jun 12, 2023 · 5 likes · 2,073 followers View post →

All mentions

Dale Yuzuki
@DaleYuzuki · X

#ASHG23 Hoischen: HiFi genomes (on Revio), Tier 2, unsolved mysteries. Case 1: severe sporadic disease, dysmorphic (hypertelorism). May 2023 paper: https://t.co/lSvdsekrjG 4 de novo "BND-calls" Chr 2 had a del-ins mutation. "Rainbow Reads" resolved. 90kb inserted.

Nov 2, 2023 · 8 likes · 5,655 followers View post →
PacBio
@PacBio · X

In this article from @gilissenc and @ahoischen, the authors evaluate the ability of #HiFisequencing to detect de novo mutations. The results show HiFi sequencing is capable of calling de novo mutations on all known variant levels with high accuracy. https://t.co/WHCWH4jCby https://t.co/fogXNvtYKg

Jul 19, 2023 · 8 likes · 44,962 followers View post →
Bart van der Sanden
@Bart_vd_S · X

Here is also a link to our manuscript: https://t.co/F3w7u5Ea2v

Jun 12, 2023 · 2 likes · 170 followers View post →
Alexander Hoischen
@ahoischen · X

Come and see our great postdoc @Bart_vd_S explain details of our recent study https://t.co/IhG1pShXmw https://t.co/tkI5YeWByW

Jun 12, 2023 · 5 likes · 2,073 followers View post →
Lei ZHANG
@jameslz · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 14, 2023 · 10 shares · 1,061 followers View post →
jenniferwalters
@susanstorm62 · X

Comprehensive de novo mutation discovery with HiFi long-read sequencing https://t.co/rEJneJKcxh https://t.co/SSYhZYnUrC

May 14, 2023 · 510 followers View post →
X-omics
@OmicsNL · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 9, 2023 · 17 shares · 187 followers View post →
Prof Mary J. O'Connell
@Evol_Molly · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 9, 2023 · 10 shares · 1,845 followers View post →
Long-read metagenomics-Papers
@LR_metagenomics · X

PacBio: Comprehensive de novo mutation discovery with HiFi long-read sequencing https://t.co/8ey3Ck1m4Q

May 9, 2023 · 368 followers View post →
Milton Tan
@mtanichthys · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 9, 2023 · 17 shares · 5,095 followers View post →
Keith Robison
@OmicsOmicsBlog · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 9, 2023 · 17 shares · 9,982 followers View post →
antisense.
@razoralign · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 9, 2023 · 17 shares · 15,931 followers View post →
Pat Adams
@PathologyPat · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 9, 2023 · 10 shares · 1,513 followers View post →
Javier Santoyo
@jsantoyo · X

Comprehensive de novo mutation discovery with HiFi long-read sequencing. #DeNovoMutations #SNVs #SVs #HiFi #LongRead @PacBio #Sequencing #LRS @GenomeMedicine https://t.co/HwOSGxzpkE

May 9, 2023 · 9 likes · 1 share · 6,104 followers View post →
AkwasiCobby
@AkwasiCobby · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 9, 2023 · 17 shares · 81 followers View post →
RareDiseaseGenomicsRSA
@RareGenomicsRSA · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 9, 2023 · 17 shares · 850 followers View post →
PH
@parham350 · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 173 followers View post →
Zev Kronenberg
@zevkronenberg · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 1,778 followers View post →
Harsh Sheth
@professor_gene · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 1,077 followers View post →
Adam Phillippy
@aphillippy · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 16,411 followers View post →
real_geneticist
@realcistron · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 80 followers View post →
Wonder
@GrandOmics · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 407 followers View post →
Emil Vorsteveld
@EmilVorsteveld · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 152 followers View post →
Dan Browne
@DRBFX · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 404 followers View post →
Gerardo Fabián
@gedof3 · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 311 followers View post →
Hormozdiari Lab
@DavisCompGen · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 693 followers View post →
Matt Holt
@holtjma · X

RT @Bart_vd_S: Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https:…

May 8, 2023 · 10 shares · 549 followers View post →
Bart van der Sanden
@Bart_vd_S · X

Happy to share our manuscript on the comprehensive detection using HiFi long-read sequencing! #HiFi #longread #denovo https://t.co/F3w7u5Ea2v

May 8, 2023 · 42 likes · 10 shares · 170 followers View post →
Junge Humangenetik
@juhumgen · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 479 followers View post →
Woody Zhidong ZHANG
@DNARNA88 · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 211 followers View post →
Adam Ameur
@_adameur · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 1,073 followers View post →
Bart van der Sanden
@Bart_vd_S · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 170 followers View post →
Alex Robertson
@robertson_mtl · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 206 followers View post →
erdikucuk
@_erdikucuk · X

RT @ahoischen: Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant le…

May 8, 2023 · 17 shares · 126 followers View post →
Alexander Hoischen
@ahoischen · X

Want to read our latest manuscript? 8 HiFi high coverage trios for systematic de novo mutation discovery - on all variant levels! Just the start to many more HiFi genomes - especially with our new Revio…@radboudumc @GeneticNijmegen https://t.co/Y8OAngw1m2

May 8, 2023 · 53 likes · 17 shares · 2,073 followers View post →