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Nat Commun July 2023 PMID 37500632

MSBooster: improving peptide identification rates using deep learning-based features.

Kevin L Yang, Fengchao Yu, Guo Ci Teo, Kai Li, Vadim Demichev, Markus Ralser, Alexey I Nesvizhskii

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Mentions

45
Peak: 29 in Oct 2022
across 2 sources since Oct 2022

Extended reach

1,087,675
potential audience

Total likes

56

Video views

17

Mentions per month

Oct 2022 – Oct 2023

Where it's discussed

  • X / Twitter44 posts
  • YouTube1 videos

AI synopsis

What people are saying

Several posts highlight the innovative use of deep learning to enhance peptide identification, emphasizing words like 'improving', 'fast', and 'integrated'. The tone reflects curiosity and recognition of technological advancements, with authors referring to the tool’s utility in workflows like immunopeptidomics and single-cell proteomics, suggesting a high perceived impact on the field.

AgreementModerate agreement

Most discussions express overall approval or recognition of MSBooster's potential benefits in proteomics research, though some comments are more neutral or brief.

InterestHigh interest

Posts demonstrate high interest by frequently mentioning deep learning, peptide identification, and the relevance to mass spectrometry, reflecting curiosity about technological advances.

EngagementModerate engagement

Many mentions reference specific methods and implications such as 'rescoring peptide-spectrum matches' or integration with existing tools, indicating moderate to deep engagement.

ImpactHigh impact

The discussions suggest that users perceive this publication as potentially influential in advancing proteomics workflows, with words like 'improving', 'fast', and 'reliable' highlighting its perceived impact.

Abstract in brief

  • MSBooster is a new tool designed to improve peptide identification in mass spectrometry experiments by using deep learning to predict peptide properties like retention time, ion mobility, and MS/MS spectra.
  • It works alongside existing tools like MSFragger and Percolator to rescoring peptide-spectrum matches, enhancing the accuracy of identifications across various workflows including immunopeptidomics and single-cell proteomics.
  • MSBooster is fast, reliable, and fully integrated into the popular FragPipe platform, making it a versatile addition to current proteomics data analysis methods.]
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Top posts

Most liked on X and Bluesky
Pastel BioScience
@PastelBio · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features | https://t.co/NzZGO9t3Wj #proteomics https://t.co/zWNld32UEG

Oct 22, 2022 · 23 likes · 3 shares · 5,377 followers View post →
Pastel BioScience
@PastelBio · X

MSBooster: improving peptide identification rates using deep learning-based features | https://t.co/6JIrCoyg4h #proteomics https://t.co/mY00WvCjq0

Jul 28, 2023 · 16 likes · 3 shares · 5,377 followers View post →
BioMassSpec
@realBioMassSpec · X

MSBooster: improving peptide identification rates using deep learning-based features #NatCommun #MassSpec https://t.co/7R7NoeJcqJ

Jul 28, 2023 · 3 likes · 2 shares · 5,995 followers View post →
Machine Learning FLX
@machinelearnflx · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0Wu0Bj #DeepLearning

Oct 22, 2022 · 2 likes · 169,437 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQqD9 #DeepLearning

Oct 25, 2022 · 2 likes · 2 shares · 33,269 followers View post →
bioRxiv Bioinfo
@biorxiv_bioinfo · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/0WPFgda2mu #biorxiv_bioinfo

Oct 21, 2022 · 2 likes · 18,072 followers View post →

All mentions

Paolo Cifani
@paolocifani · X

https://t.co/FQMWeFw235

Aug 31, 2023 · 2 likes · 211 followers View post →
wook
@wook20120711 · X

RT @BioDecoded: MSBooster: improving peptide identification rates using deep learning-based features | Nature Communications https://t.co/K…

Aug 23, 2023 · 3 shares · 15 followers View post →
Saubashya Sur, PhD
@SaubashyaSur · X

RT @BioDecoded: MSBooster: improving peptide identification rates using deep learning-based features | Nature Communications https://t.co/K…

Aug 22, 2023 · 3 shares · 765 followers View post →
Yang Fang
@xiaoxiaoyangs · X

RT @BioDecoded: MSBooster: improving peptide identification rates using deep learning-based features | Nature Communications https://t.co/K…

Aug 22, 2023 · 3 shares · 23 followers View post →
BioDecoded
@BioDecoded · X

MSBooster: improving peptide identification rates using deep learning-based features | Nature Communications https://t.co/KR5FIrqTna #Bioinformatics https://t.co/o7iBXx8alU

Aug 22, 2023 · 2 likes · 3 shares · 8,899 followers View post →
Esaú Bojórquez
@Esau_BV · X

RT @PastelBio: MSBooster: improving peptide identification rates using deep learning-based features | https://t.co/6JIrCoyg4h #proteomics h…

Jul 29, 2023 · 3 shares · 380 followers View post →
Dapeng Chen
@CharlieSaid3 · X

RT @realBioMassSpec: MSBooster: improving peptide identification rates using deep learning-based features #NatCommun #MassSpec https://t.co…

Jul 28, 2023 · 2 shares · 21 followers View post →
Nurhan Ozlu
@NurhanOzlu · X

RT @pmxpapers: MSBooster: improving peptide identification rates using deep learning-based features https://t.co/uKY98Msa0m https://t.co/0y…

Jul 28, 2023 · 2 shares · 501 followers View post →
Shiva Shankar S
@BioShankar · X

RT @PastelBio: MSBooster: improving peptide identification rates using deep learning-based features | https://t.co/6JIrCoyg4h #proteomics h…

Jul 28, 2023 · 3 shares · 160 followers View post →
Daniel Geiszler
@GeiszlerDaniel · X

RT @pmxpapers: MSBooster: improving peptide identification rates using deep learning-based features https://t.co/uKY98Msa0m https://t.co/0y…

Jul 28, 2023 · 2 shares · 304 followers View post →
Daniel Geiszler
@GeiszlerDaniel · X

RT @PastelBio: MSBooster: improving peptide identification rates using deep learning-based features | https://t.co/6JIrCoyg4h #proteomics h…

Jul 28, 2023 · 3 shares · 304 followers View post →
Dr. Biswapriya Misra
@BiswapriyaMisra · X

RT @realBioMassSpec: MSBooster: improving peptide identification rates using deep learning-based features #NatCommun #MassSpec https://t.co…

Jul 28, 2023 · 2 shares · 5,757 followers View post →
BioMassSpec
@realBioMassSpec · X

MSBooster: improving peptide identification rates using deep learning-based features #NatCommun #MassSpec https://t.co/7R7NoeJcqJ

Jul 28, 2023 · 3 likes · 2 shares · 5,995 followers View post →
Pastel BioScience
@PastelBio · X

MSBooster: improving peptide identification rates using deep learning-based features | https://t.co/6JIrCoyg4h #proteomics https://t.co/mY00WvCjq0

Jul 28, 2023 · 16 likes · 3 shares · 5,377 followers View post →
Proteomics Papers
@pmxpapers · X

MSBooster: improving peptide identification rates using deep learning-based features https://t.co/uKY98Msa0m https://t.co/0yYHYfGu4O

Jul 28, 2023 · 2 shares · 513 followers View post →
Omalichazeezee
@omalichazinny · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQqD9 #DeepLearn…

Oct 27, 2022 · 2 shares · 1,055 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @machinelearnflx: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLea…

Oct 26, 2022 · 2 shares · 2,518 followers View post →
J. J. C. Cpda.
@c_cpda · X

RT @machinelearnflx: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLea…

Oct 25, 2022 · 2 shares · 75 followers View post →
Machine Learning FLX
@machinelearnflx · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLearning

Oct 25, 2022 · 1 like · 2 shares · 169,437 followers View post →
shokufe Rezayi
@ShokufeR · X

RT @machinelearnflx: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLea…

Oct 25, 2022 · 2 shares · 16 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQqD9 #DeepLearn…

Oct 25, 2022 · 2 shares · 2,518 followers View post →
J. J. C. Cpda.
@c_cpda · X

RT @machinelearnflx: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLea…

Oct 25, 2022 · 2 shares · 75 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQqD9 #DeepLearning

Oct 25, 2022 · 2 likes · 2 shares · 33,269 followers View post →
Machine Learning FLX
@machinelearnflx · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLearning

Oct 25, 2022 · 1 like · 2 shares · 169,437 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQqD9 #DeepLearn…

Oct 24, 2022 · 1 share · 2,518 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQqD9 #DeepLearning

Oct 24, 2022 · 1 like · 1 share · 33,269 followers View post →
Machine Learning FLX
@machinelearnflx · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0WLBZT #DeepLearning

Oct 24, 2022 · 1 like · 169,437 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUyPez #DeepLearn…

Oct 24, 2022 · 1 share · 2,518 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUyPez #DeepLearning

Oct 24, 2022 · 1 share · 33,269 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQYsH #DeepLearn…

Oct 23, 2022 · 1 share · 2,518 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUQYsH #DeepLearning

Oct 23, 2022 · 1 share · 33,269 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUyPez #DeepLearn…

Oct 23, 2022 · 1 share · 2,518 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUyPez #DeepLearning

Oct 23, 2022 · 1 share · 33,269 followers View post →
Machine Learning FLX
@machinelearnflx · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/CS3e0Wu0Bj #DeepLearning

Oct 22, 2022 · 2 likes · 169,437 followers View post →
Patrick_Roubinet
@Pvalsfr · X

RT @Datascience__: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUyPez #DeepLearn…

Oct 22, 2022 · 1 share · 2,518 followers View post →
Data science
@Datascience__ · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/l2YvcUyPez #DeepLearning

Oct 22, 2022 · 1 share · 33,269 followers View post →
Shiva Shankar S
@BioShankar · X

RT @PastelBio: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features | https://t.co/NzZGO9t3Wj #proteomics h…

Oct 22, 2022 · 3 shares · 160 followers View post →
Mass-spec@RIKEN BDR KOBE
@bdr_massspec · X

RT @PastelBio: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features | https://t.co/NzZGO9t3Wj #proteomics h…

Oct 22, 2022 · 3 shares · 68 followers View post →
Joel Steele
@JoelisSteele · X

RT @PastelBio: MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features | https://t.co/NzZGO9t3Wj #proteomics h…

Oct 22, 2022 · 3 shares · 825 followers View post →
Pastel BioScience
@PastelBio · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features | https://t.co/NzZGO9t3Wj #proteomics https://t.co/zWNld32UEG

Oct 22, 2022 · 23 likes · 3 shares · 5,377 followers View post →
Unreadable Preprint Bot
@UnReadBot · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features FK grade 22 (very unreadable)

Oct 21, 2022 · 16 followers View post →
Helio Rocha
@_elioRocha · X

#bioRxiv MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features #bioinfo https://t.co/x2CI7BFQrM

Oct 21, 2022 · 609 followers View post →
bioRxiv Bioinfo
@biorxiv_bioinfo · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/0WPFgda2mu #biorxiv_bioinfo

Oct 21, 2022 · 2 likes · 18,072 followers View post →
bioRxiv
@biorxivpreprint · X

MSBooster: Improving Peptide Identification Rates using Deep Learning-Based Features https://t.co/9xscoXCH2S #bioRxiv

Oct 21, 2022 · 136,946 followers View post →