Double Digest Restriction-Site Associated DNA Sequencing (ddRAD-Seq).

Out today in @genetics-gsa.bsky.social #G3journal - our manuscript describing biases in summary statistics like genetic differentiation (Fst), diversity (pi), Tajima’s D, and estimates of theta, migration rates, and divergence times when not accounting for ghost gene flow. doi.org/10.1093/g3jo...

It’s out! Our work on blended genomic and phenomic predictions is now available on G3! (I’m so happy I can cry.

Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex traits. #MaizeTraits #Transcriptome #G3 https://t.co/kkoO0LjIJ7 https://t.co/fNMDAmGqwA

"Phylogenomic species delimitation of studfishes (Fundulidae: Fundulus): evidence for cryptic species in agreement with the central highlands vicariance hypothesis" Fast et al. 2025 Zootaxa Describe two new Fundulus species from the Tennessee River and Ouachita Highlands!

The paper is now published in #G3journal !

Limitations of current machine learning models in predicting enzymatic functions for uncharacterized proteins https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf169/8211502

MLDAAPP: machine learning data acquisition for assessing population phenotypes https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf173/8220571

Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf176/8223452

RT @AndGenomics: The haplotype-resolved assembly of COL40 a cassava (Manihot esculenta) line with broad-spectrum resistance against viruse…

The haplotype-resolved assembly of COL40 a cassava (Manihot esculenta) line with broad-spectrum resistance against viruses causing Cassava brown streak disease unveils a region of highly repeated elements on chromosome 12 https://t.co/L4EvPjuO9G

RT @GeneticsGSA: New study in #G3journal uses Bayesian generalized linear regression models and machine learning models trained on the imag…

Ghosts of symbionts past: The hidden history of the dynamic association between filarial nematodes and their Wolbachia endosymbionts https://t.co/b5TWbjt1Gd https://t.co/CntJLLMgs0

New in #G3journal: Sethuraman et al. describe biases in summary statistics, such as genetic differentiation, diversity, Tajima’s D, and estimates of theta, migration rates, and divergence for understanding genomic signatures from extinct ghost populations. https://t.co/QWqmOf2ohQ https://t.co/LSfzhJSO43

New research from @Lab_LaBella identifies unique features of phytopathogens by comparing genomes of several plant-pathogenic Saccharomycotina fungi strains. Read more in #G3journal about metabolic enzymes that help destroy plant defenses: https://t.co/fWX2303Vex https://t.co/JtkAe1BY5d

New research in #G3journal from @Frog_squisher et al. shows the utility of unilateral CRISPR editing in Xenopus. The researchers created mutations in the RecQ helicase gene and identified phenotypic developmental defects in the mutant half of the animal. https://t.co/jEKLj56v8v https://t.co/JYPy2JvNk9

RT @GeneticsGSA:

A study in #G3journal examines the interplay between ecdysone signaling and O-GlcNAcylation in #Drosophila intestinal stem cell proliferation and gut homeostasis in aging, thereby linking age-related, abnormal stem cell proliferation to metabolic diseases. https://t.co/6jdiwhLiBK https://t.co/ERRGGEPLAU

In #G3journal, Juan Antonio Sanpedro Luna and Patricia Sánchez Alonso used comparative genomics to identify a putative MgTER gene, which encodes the telomerase RNA subunit, in the #yeast species Malassezia globosa. https://t.co/7P3iQEcPtO https://t.co/0x0qXCga3g

In #G3journal, Sgro et al. identified genes involved in quinic acid utilization as well as previously unknown permease genes upregulated in the presence of quinic acid in the filamentous fungus Aspergillus niger. https://t.co/i0Z59Rnb1n https://t.co/fGUCjYvGTM

In #G3journal, Rockman et al. investigated the utility of obligately outcrossing #Caenorhabditis #nematodes as models for inbreeding depression, showing it is universal but highly variable among species and populations. https://t.co/CpOYbJE6cx https://t.co/CTySzUagOV

Latest in #G3journal: A #GWAS for tailocin sensitivity across a diverse set of Pseudomonas syringae genomes reveals that genes strongly correlated with tailocin sensitivity localize to chromosomal region encoding lipopolysaccharide structures. https://t.co/5LGGZdZLAI https://t.co/2TFsakqqMA

@Frakes_AE This important work #G3journal highlights the importance of mindful documentation of breeding schemes and characterization of Cre drivers in #glia research. (2/2) Learn more: https://t.co/lcJFoMtKoK

RT @GeneticsGSA: New study in #G3journal describes a #python-based model of directional artificial selection for increasing the variability…

New study in #G3journal describes a #python-based model of directional artificial selection for increasing the variability of a polygenic trait, focusing on #Drosophila left-vs-right turn bias variability. https://t.co/jkh7MeMzr9 https://t.co/pVOL9o16Gq

RT @HelleBaalsrud: New study on fungi: We found massive genomic rearrangements & low conservation in how two Mucor circinelloides strains r…

New study on fungi: We found massive genomic rearrangements & low conservation in how two Mucor circinelloides strains regulate genes under calcium stress. This explains why they produce oils & pigments so differently. https://t.co/wynpPJlRBJ #Genomics #Fungi #Biotech #EBP https://t.co/exV3SKlJ4b

RT @PhaseGenomics:

Comparison of long read sequencing technologies in resolving bacteria and fly genomes published as: https://t.co/4TFZeCCyIb #G3_Genes|Genomes|Genetics #biorxiv

“Efficient iterative CRISPR/Cas9 editing using sid-1 co-conversion and feeding RNAi in Caenorhabditis elegans” Weisman A, Fisher N, Hunter CP. G3 (Bethesda), 2025-08-06. https://t.co/zgOFGyNos7

Latest in #G3journal: Kerrebrock et al. identified new satellite DNA sequences in the fungus gnat, Bradysia coprophila, to better understand how the species achieves programmed DNA elimination during development. https://t.co/QWy12hcpvR https://t.co/9iaJ2Wb2V3

New research in #G3journal identifies the functions of the DNMT methyltransferase enzyme in Dictyostelium discoideum, where the enzyme deletion impacts cell growth, morphology, motility, nuclear organization, and organism development. https://t.co/E70cxG4COC https://t.co/FOOupQxPS9

Genome report: whole-genome assembly of the relapsing fever tick Ornithodoros turicata Dugès (Acari: Argasidae) https://t.co/GEYRkEIGx9

RT @GeneticsGSA:

A Genetic Screen for Temperature-sensitive Morphogenesis-defective Caenorhabditis elegans Mutants published as: https://t.co/ABqA7iV5gz #G3_Genes|Genomes|Genetics #biorxiv

High-Quality Genome Assembly and Annotation of the California Harvester Ant Pogonomyrmex californicus (Buckley, 1867) published as: https://t.co/xiUQvPtu3x #G3_Genes|Genomes|Genetics #biorxiv

“Improved vectors for retron-mediated CRISPR-Cas9 genome editing in Saccharomyces cerevisiae” Stuecker TN [..] Lewis JA. G3 (Bethesda). 2025-08-04. https://t.co/usVue01bGA

Alexis Kriete and Maxwell Scott investigated the transgenerational effects of tetracycline antibiotics in the blowfly, a sheep pest. Read more in #G3journal how this work sheds light on the transcriptional and microbial responses to antibiotic exposure. https://t.co/rgLafN0Z17 https://t.co/iQAE8ofg6V

AlphaSimR: An R-package for Breeding Program Simulations published as: https://t.co/bqD1026MJn #G3_Genes|Genomes|Genetics #biorxiv

Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant | Cerda-Herrera (2025) G3 https://t.co/ugmZPLzezR

New study in #G3journal presents a clone trial performed on black spruce trees in Québec, offering new insights into the genotypic parameters and clonal stability within contrasting environments for population improvement across seed and breeding zones: https://t.co/X0RE14Jtzt https://t.co/dpiFOiBBxx

New study in #G3journal uses Bayesian generalized linear regression models and machine learning models trained on the images of low deoxynivalenol-infected wheat kernels for phenomic and genomic predictions. https://t.co/v5ZTQJTDo8 https://t.co/mjxD5BE6wV

New #CRISPR resource in #G3journal: A set of plasmids expressing Cas9-EcRT allows for co-transformation with the gRNA-repair template plasmid in a single step while containing different antibiotic or auxotrophic markers for gene editing in #yeast. https://t.co/WobUJQ1QuL https://t.co/gOcaNh1A12

Latest study in #G3journal features a novel allele of Mta3, a gene encoding components of the nucleosome remodeling deacetylase in mammals, showing homozygous mutant animals are viable, fertile, and have no phenotype defects. https://t.co/UWPqqwjKXi https://t.co/Fv3kEFnf5j

In #G3journal, Lumbroso et al. selected yeast mutations that produced viable spores in the absence of recombination, identifying mutations in B-type cyclins. Learn about the effect of deleting the cyclin gene on sister centromere separation & segregation: https://t.co/ztswi35N3I https://t.co/N22TLLgiP5

RT @GeneticsGSA: New in #G3journal: Rivera-Madera et al. used in vitro and in silico approaches to study how missense mutations in the TBX5…

RT @GeneticsGSA: New in #G3journal: Rivera-Madera et al. used in vitro and in silico approaches to study how missense mutations in the TBX5…

New in #G3journal: Rivera-Madera et al. used in vitro and in silico approaches to study how missense mutations in the TBX5, a transcription factor important in heart development, affect protein structure, thermal stability, and DNA-binding affinity. https://t.co/Gwu4p3Lkw6 https://t.co/ZcRsLAf0Kr

RT @GeneticsGSA: In #G3journal, @trstn_gnthr, @AmyAGoldberg, and @jgschraiber benchmarked methods for estimating ancestry proportions under…

RT @GeneticsGSA: In #G3journal, @trstn_gnthr, @AmyAGoldberg, and @jgschraiber benchmarked methods for estimating ancestry proportions under…

In #G3journal, @trstn_gnthr, @AmyAGoldberg, and @jgschraiber benchmarked methods for estimating ancestry proportions under mapping bias and present adjusted genotype-likelihoods to mitigate its impact. https://t.co/M2cRGsmICX https://t.co/CjmPoiORpi

La babosa de jardín, Deroceras laeve, es un organismo modelo para el estudio de la regeneración. En un esfuerzo tri nacional entre México, Estados Unidos y la República Checa, se secuenció el genoma de la babosa y se reconstruyeron sus 31 cromosomas. https://t.co/AojHSuyJ0e

RT @GeneticsGSA: How accurate and reliable are #machinelearning models in biological predictions? New #G3journal report shows how current…

Work in #G3journal demonstrates that the abnormal gonad morphology and novel sterility phenotype in the lin-28 null allele and hbl-1 hypomorphic allele result from the loss of hbl-1 activity in larval development. https://t.co/gOnw9TkQ1Y https://t.co/llsZA0hDeP

How accurate and reliable are #machinelearning models in biological predictions? New #G3journal report shows how current machine learning methods not only fail to make novel predictions but also make basic logic errors in their predictions. https://t.co/A2AOhhw156 https://t.co/oFlzA8Cdwc

Out today in @genetics-gsa.bsky.social #G3journal - our manuscript describing biases in summary statistics like genetic differentiation (Fst), diversity (pi), Tajima’s D, and estimates of theta, migration rates, and divergence times when not accounting for ghost gene flow. doi.org/10.1093/g3jo...

RT @jsantoyo: Bar-seq: A robust, platform-agnostic method for massively parallel cell-based screens. #BarcodeSequencing #Genomics #Bioinfor…

RT @jsantoyo: Bar-seq: A robust, platform-agnostic method for massively parallel cell-based screens. #BarcodeSequencing #Genomics #Bioinfor…

Bar-seq: A robust, platform-agnostic method for massively parallel cell-based screens. #BarcodeSequencing #Genomics #Bioinformatics #G3 https://t.co/5NpyuaRnsS https://t.co/0IPQqT1n8Q

RT @IIM_CSIC:

RT @oneandJHONly: It’s out! Our work on blended genomic and phenomic predictions is now available on G3! (I’m so happy I can cry.

It’s out! Our work on blended genomic and phenomic predictions is now available on G3! (I’m so happy I can cry.

Rapid divergence of the copulation proteins in the Drosophila dunni group is associated with hybrid post-mating-prezygotic incompatibilities published as: https://t.co/TaSTyrFSZL #G3_Genes|Genomes|Genetics #biorxiv

"Characterizing fatty acid oxidation genes in Drosophila" Geronazzo J, Heimerl A [..] Course MM. G3 (Bethesda) 2025-06-16. https://t.co/38gYx7YxrH We use CRISPR-Cas9 to generate mutations in 6 putative FAO genes in Drosophila, … https://t.co/zpVcrfyZXa

RT @GeneticsGSA: In #G3journal, @RaiMadhulik, @TennessenLab, and colleagues generated new loss-of-function mutations in the #Drosophila D2h…

In #G3journal, @RaiMadhulik, @TennessenLab, and colleagues generated new loss-of-function mutations in the #Drosophila D2hgdh gene to study D-2-hydroxyglutarate, a potent oncometabolite, function during development and disease. Read more: https://t.co/ZzZVNWO0A1 https://t.co/8oGb4lg4Ki

RT @GeneticsGSA:

MLDAAPP: Machine Learning Data Acquisition for Assessing Population Phenotypes https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkaf173/8220571

We believe the ubiquitous, easy to rear, terrestrial slug has great potential as a model organism. Here is our latest effort, a further resource that opens up its study to multiomics https://t.co/BBL5BNLfMC

Ever wonder if there’s blackberry seeds you are getting are for prickly or prickle free plants? Now you can test it! A recent publication has made a tool for famers to test black berry genetics! See more in our latest #YouTube short! #scicomm #sciants youtu.be/RZn0Xk0GWG0

Ever wonder if there’s blackberry seeds you are getting are for prickly or prickle free plants? Now you can test it! A recent publication has made a tool for famers to test black berry genetics! See more in our latest #YouTube short! #scicomm #sciants https://t.co/BtwX2O1X8w

Sumber: Colleen Lawless, Lauren E Simonitis, John A Finarelli, Graham M Hughes, Decoding deception: the binding affinity of cuttlefish ink on shark smell receptors, G3 Genes|Genomes|Genetics, Volume 15, Issue 3, March 2025, jkaf001, https://t.co/FGZYuMU2ND. Diakses 23 Juli 2025. https://t.co/MBUhSC3LuS

Sumber: Colleen Lawless, Lauren E Simonitis, John A Finarelli, Graham M Hughes, Decoding deception: the binding affinity of cuttlefish ink on shark smell receptors, G3 Genes|Genomes|Genetics, Volume 15, Issue 3, March 2025, jkaf001, https://t.co/mUspyN8L6C. Diakses 23 Juli 2025. https://t.co/FRK0ZBGGps

Extracting good-quality DNA from cyanobacteria is challenging due to their diverse morphologies and microbiomes present in cultures. In #G3journal, @CatsAreFish et al. optimized a DNA isolation protocol using three cell lysis steps to enrich extracted DNA: https://t.co/7B83PoCTYr https://t.co/TYkvcbNAiy

In #G3journal, Bermann et al. developed a tool validationf90 within the Blupf90 software suite, allowing researchers to conduct semi-parametric validation of genomic predictions and polygenic risk scores. Read more: https://t.co/q0MOVd68p4 https://t.co/QCJN4zQjwP

Euphalic Deroceras laeve slug genome is out there. Chromosomal level assembly! I'm happy we could collaborate with @slugatlas and contribute with our expertise. Our aphalic genome is finished to the chromosomal level too! Stay tuned

chromosome-level genome assembly of the slug Deroceras laeve facilitates its use as a comparative model of regeneration https://t.co/G2kPmZaJCx

Our paper just appeared online: https://t.co/DmXvswfE9l https://t.co/VtISaqhxXo

New research in #G3journal employs #CRISPR editing to generate mutations in #Drosophila fatty acid oxidation genes, thereby identifying molecular mechanisms underlying a group of rare genetic diseases known as fatty acid oxidation disorders. Read more: https://t.co/ooy4yvGlsE https://t.co/Xa3suEcjdn

RT @StevenSalzberg1: We published the redwood genome yesterday, the culmination of a multi-year project to sequence the huge (26.5 Gb) geno…

MultiPhATE2: Code for Functional Annotation and Comparison of Bacteriophage Genomes published as: https://t.co/ByGgkDyp68 #G3_Genes|Genomes|Genetics #biorxiv

RT @jsantoyo: Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex…

RT @jsantoyo: Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex…

RT @jsantoyo: Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex…

RT @jsantoyo: Bar-seq: A robust, platform-agnostic method for massively parallel cell-based screens. #CellBasedScreens #YeastGenomics #Drug…

Bar-seq: A robust, platform-agnostic method for massively parallel cell-based screens. #CellBasedScreens #YeastGenomics #DrugAssay #G3 https://t.co/5NpyuaRnsS https://t.co/37qzucetUI

RT @jsantoyo: Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex…

RT @jsantoyo: Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex…

Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex traits. #MaizeTraits #Transcriptome #G3 https://t.co/kkoO0LjIJ7 https://t.co/fNMDAmGqwA

Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. published as: https://t.co/fioQKy5Fwc #G3_Genes|Genomes|Genetics #biorxiv

RT @GeneticsGSA: In #G3journal, @AMV_REDOX et al. discover that increasing the activity of the reverse transsulfuration pathway can compens…

In #G3journal, @AMV_REDOX et al. discover that increasing the activity of the reverse transsulfuration pathway can compensate for the detrimental effect of the glutathione reductase (gsr-1) mutation allowing normal development and growth in #Celegans.

The draft genome sequence of herbaceous diploid bamboo Raddia distichophylla published as: https://t.co/jkpbIHvOFQ #G3_Genes|Genomes|Genetics #biorxiv

13.Sun, Y., Zhang, X., Wu, Z., Li, W. & Kim, W. J. Genetic Screening Reveals Cone Cell-Specific Factors as Common Genetic Targets Modulating Rival-Induced Prolonged Mating in male Drosophila melanogaster. G3: Genes, Genomes, Genet. jkae255 (2024) doi:10.1093/g3journal/jkae255.

Austropuccinia psidii, causing myrtle rust, has a gigabase-sized genome shaped by transposable elements published as: https://t.co/lUUaHMKBNG #G3_Genes|Genomes|Genetics #biorxiv

RT @biorxiv_pubd: Effects of sheared chromatin length on ChIP-seq quality and sensitivity published as: https://t.co/pomfxUjVLC #G3_Genes|G…

Effects of sheared chromatin length on ChIP-seq quality and sensitivity published as: https://t.co/pomfxUjVLC #G3_Genes|Genomes|Genetics #biorxiv

Genome-wide RNAi screen for regulators of UPRmt in Caenorhabditis elegans mutants with defects in mitochondrial fusion published as: https://t.co/jvtbbAtWTl #G3_Genes|Genomes|Genetics #biorxiv

RT @MeruSadhu: New paper from my lab! We describe our idea that high-throughput pooled experimental methods – typically used to test thousa…

RT @MeruSadhu: New paper from my lab! We describe our idea that high-throughput pooled experimental methods – typically used to test thousa…

RT @MeruSadhu: New paper from my lab! We describe our idea that high-throughput pooled experimental methods – typically used to test thousa…

New paper from my lab! We describe our idea that high-throughput pooled experimental methods – typically used to test thousands of hypotheses at once – also have huge potential to help in “everyday” experiments testing one or a few focused hypotheses. https://t.co/50WVtwiy4j

Testcrosses are an efficient strategy for identifying cis regulatory variation: Bayesian analysis of allele specific expression (BASE) published as: https://t.co/uZ0wLPc6vm #G3_Genes|Genomes|Genetics #biorxiv

RT @rmwaterhouse:

RT @rmwaterhouse:

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RT @GeneticsGSA:

New in #G3journal: Cytological studies reveal that ELYS, a #Drosophila nuclear pore complex subunit, is involved in the apposition of female and male pronuclei, affecting the parental genome configuration of the first mitotic spindle during fertilization. https://t.co/hgDoFUW4E4 https://t.co/njl5IUoxlu

https://t.co/DrwtyXFZU1 https://t.co/VQ1D91X868

A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia Illucens L.) published as: https://t.co/ExKHtroLj2 #G3_Genes|Genomes|Genetics #biorxiv

RT @iam_shef: Check out our work in @GeneticsGSA #G3journal on new #Drosophila tools for studying D-2HG #oncometabolite in a context depend…

RT @GeneticsGSA: Work from @BracewellLab in #G3journal shows QTL characterization in mountain pine beetle—an insect pest—revealing the reco…

Work from @BracewellLab in #G3journal shows QTL characterization in mountain pine beetle—an insect pest—revealing the recombination landscape, the sex-biased inheritance of recombined X chromosomes, and the genomic location of key traits. Read more: https://t.co/EkrnsS1VkR https://t.co/SKn55W43k2

Estimating the effective sample size in association studies of quantitative traits published as: https://t.co/KjJuRG6SaA #G3_Genes|Genomes|Genetics #biorxiv

Transcribed germline-limited coding sequences in Oxytricha trifallax published as: https://t.co/omi6cxcEb5 #G3_Genes|Genomes|Genetics #biorxiv

Identification of pathways modulating Vemurafenib resistance in melanoma cells via a genome-wide CRISPR/Cas9 screen published as: https://t.co/h0qpltyztv #G3_Genes|Genomes|Genetics #biorxiv

PARPAL: PARalog Protein Redistribution using Abundance and Localization in Yeast Database https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkaf148/8177199

Using Repeated Lysis Steps Fractionates Between Heterotrophic and Cyanobacterial DNA Extracted from Xenic Cyanobacterial Cultures. #nanopore #cyanobacteria https://t.co/qm6WYIVofI https://t.co/iXdchXoUQl

Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar) published as: https://t.co/SEONCDkhT2 #G3_Genes|Genomes|Genetics #biorxiv

First annotated draft genomes of non-marine ostracods (Ostracoda, Crustacea) with different reproductive modes published as: https://t.co/gKLAuQIv9c #G3_Genes|Genomes|Genetics #biorxiv

Neuroscience #LippmanBellLab (Early-life seizures/ Memory/ Seizure Susceptibility) https://doi.org/10.1016/j.nbd.2025.106978 #HaroldBurgessLab (Alternative splicing/ Microexon/ Neural development) https://doi.org/10.1093/g3journal/jkaf052 (15/38)

Generalized gametic relationships for flexible analyses of parent-of-origin effects published as: https://t.co/wg1bxjrXn6 #G3_Genes|Genomes|Genetics #biorxiv

Genomic analyses of two Italian oyster mushroom Pleurotus pulmonarius strains published as: https://t.co/jvzFri8vKs #G3_Genes|Genomes|Genetics #biorxiv

Rates of gene conversions between Escherichia coli ribosomal operons published as: https://t.co/44I2860pwL #G3_Genes|Genomes|Genetics #biorxiv

A C. elegans genome-wide RNAi screen for altered levamisole sensitivity identifies genes required for muscle function published as: https://t.co/mZekM83TzR #G3_Genes|Genomes|Genetics #biorxiv

Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum published as: https://t.co/CmZnuMR2Hu #G3_Genes|Genomes|Genetics #biorxiv

RT @benagen3571: uclear and organelle genome assemblies of five Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais and Zhima…

Neighbor QTL: an interval mapping method for quantitative trait loci underlying plant neighborhood effects published as: https://t.co/04INMRNTDw #G3_Genes|Genomes|Genetics #biorxiv

RT @Dominique_Domon: Juncus effususのゲノム解読自体は2022年にアメリカの研究グループの手によって行われている。 https://t.co/N5JLEDG326

Juncus effususのゲノム解読自体は2022年にアメリカの研究グループの手によって行われている。 https://t.co/N5JLEDG326

Ultra-conserved sequences in the genomes of highly diverse Anopheles mosquitoes, with implications for malaria vector control. published as: https://t.co/ft8FOQSxHY #G3_Genes|Genomes|Genetics #biorxiv

A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals structural genome variation in rainbow trout published as: https://t.co/Y1JWqxqQVa #G3_Genes|Genomes|Genetics #biorxiv

RT @benagen3571: uclear and organelle genome assemblies of five Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais and Zhima…

uclear and organelle genome assemblies of five Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais and Zhimali, belonging to diverse botanical groups。 #nanopore #genome https://t.co/tJclclnayW https://t.co/DYa94on1YE

Nuclear and organelle genome assemblies of five Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais and Zhimali, belonging to diverse botanical groups。 #nanopore #genome https://t.co/KtbCedvpVE https://t.co/IyUUXXXRuf

Deficiency of intellectual disability-related gene Brpf1 reduced inhibitory neurotransmission and Map2k7 expression in GABAergic interneurons published as: https://t.co/GDILNSOBKH #G3_Genes|Genomes|Genetics #biorxiv

The research was published in the G3 - Genes | Genomes | Genetics journal: https://t.co/Cc5lv9lOTR

Happy to share that our Bougainvillia genome paper is out in G3! Genome assembly of Bougainvillia cf. muscus (Cnidaria: Hydrozoa) url:https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf110/8137915

Genomic region associated with pod color variation in pea (Pisum sativum) published as: https://t.co/6Pg1ibpxuA #G3_Genes|Genomes|Genetics #biorxiv

LI Detector: a framework for sensitive colony-based screens regardless of the distribution of fitness effects published as: https://t.co/g37bcyomBl #G3_Genes|Genomes|Genetics #biorxiv

Long non-coding RNA regulation of spermatogenesis and endosomal processes via the spectrin cytoskeleton in Drosophila published as: https://t.co/oM2IXRXVUD #G3_Genes|Genomes|Genetics #biorxiv

Forward genetic screens identified mutants with defects in trap morphogenesis in the nematode-trapping fungus Arthrobotrys oligospora published as: https://t.co/Zdbel4n6h0 #G3_Genes|Genomes|Genetics #biorxiv

Single cell visualisation of mir-9a and Senseless co-expression during Drosophila melanogaster embryonic and larval peripheral nervous system development published as: https://t.co/GzyDOhWP0K #G3_Genes|Genomes|Genetics #biorxiv

The paper is now published in #G3journal !

Diploid chromosome-scale assembly of the Muscadinia rotundifolia genome supports chromosome fusion and disease resistance gene expansion during Vitis and Muscadinia divergence published as: https://t.co/VFv36gDvWR #G3_Genes|Genomes|Genetics #biorxiv

Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defences published as: https://t.co/jIACyL3Dqn #G3_Genes|Genomes|Genetics #biorxiv

A closed-loop optogenetic screen for neurons controlling feeding in Drosophila published as: https://t.co/mb928zX6Fz #G3_Genes|Genomes|Genetics #biorxiv

MoBPSweb: A web-based framework to simulate and compare breeding programs published as: https://t.co/JEiECwZl09 #G3_Genes|Genomes|Genetics #biorxiv

A telomere to telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes published as: https://t.co/J8eqzrhOlF #G3_Genes|Genomes|Genetics #biorxiv

A high-quality genome assembly and annotation of the gray mangrove, Avicennia marina published as: https://t.co/77XEZ87JJG #G3_Genes|Genomes|Genetics #biorxiv

Shannon Entropy as a metric for conditional gene expression in Neurospora crassa published as: https://t.co/VEOoWWGHUr #G3_Genes|Genomes|Genetics #biorxiv

Accurate, ultra-low coverage genome reconstruction and association studies in Hybrid Swarm mapping populations published as: https://t.co/yQ44Z8eaKL #G3_Genes|Genomes|Genetics #biorxiv

【genomic study】The draft genome assembly of the cosmopolitan pelagic fish dolphinfish (Coryphaena hippurus). #nanopore #genome https://t.co/Zxv0klnlpl https://t.co/9ECfQ0F1So

【genomic study】The draft genome assembly of the cosmopolitan pelagic fish dolphinfish (Coryphaena hippurus). #nanopore #genome https://t.co/7jf0lPzI7G https://t.co/are26J49bX

RT @niooknaw: New publication: Editorial: Ecological #genomics beyond genome reports. #genomereports #modelorganisms https://t.co/OaW75Etmjo

New publication: Editorial: Ecological #genomics beyond genome reports. #genomereports #modelorganisms https://t.co/OaW75Etmjo

A Statistical Framework for QTL Hotspot Detection published as: https://t.co/UDVyaARiCo #G3_Genes|Genomes|Genetics #biorxiv

Mapping the architecture of regulatory variation provides insights into the evolution of complex traits published as: https://t.co/DNBS0L6gLq #G3_Genes|Genomes|Genetics #biorxiv

RT @nickfradgley: Recombination and structural variation in a large 8-founder wheat MAGIC population https://t.co/BL8i01HDOi

Recombination and structural variation in a large 8-founder wheat MAGIC population https://t.co/BL8i01HDOi

"Phylogenomic species delimitation of studfishes (Fundulidae: Fundulus): evidence for cryptic species in agreement with the central highlands vicariance hypothesis" Fast et al. 2025 Zootaxa Describe two new Fundulus species from the Tennessee River and Ouachita Highlands!

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

RT @bibakinmade: Cool news! My first FIRST-author paper and the first publication from my PhD is now published! We explored the genetic a…

Our (@jeffsekelsky.bsky.social, Corbin Jones, & me) #Meiosis, Recombination & Evolution of Sex class @uncchapelhill.bsky.social loved talking w/ Bengt Hansson from @lund-university.bsky.social about his lab's #G3journal paper on bird male-biased CO patterning + new work: doi.org/10.1093/g3jo...

New paper in G3: Genes, Genomes, Genetics using @gbif.org mediated data: Reference genome of Calochortus tolmiei Hook. & Arn. (Liliaceae), a cat’s ear mariposa lily

Color morphs of the coral, Acropora tenuis, show different responses to environmental stress and different expression profiles of fluorescent-protein genes published as: https://t.co/pHMkLK8eTU #G3_Genes|Genomes|Genetics #biorxiv

Local adaptation contributes to gene expression divergence in maize published as: https://t.co/ZYgDn9cNWz #G3_Genes|Genomes|Genetics #biorxiv

Treatment of the X chromosome in mapping multiple quantitative trait loci published as: https://t.co/Sr5LdLk3xJ #G3_Genes|Genomes|Genetics #biorxiv

Complex pleiotropic genetic architecture of evolved heat stress and oxidative stress resistance in the nematode Caenorhabditis remanei published as: https://t.co/ckjnpCi3YT #G3_Genes|Genomes|Genetics #biorxiv

RT @biorxiv_pubd: Linking Anthocyanin Diversity, Hue, And Genetics In Purple Corn published as: https://t.co/JtDWIxKNKp #G3_Genes|Genomes|G…

Whole genome assembly of Culex tarsalis published as: https://t.co/5mKPLt09p1 #G3_Genes|Genomes|Genetics #biorxiv

Performing Parentage Analysis for Polysomic Inheritances Based on Allelic Phenotypes published as: https://t.co/jRatFm64rw #G3_Genes|Genomes|Genetics #biorxiv

Linking Anthocyanin Diversity, Hue, And Genetics In Purple Corn published as: https://t.co/JtDWIxKNKp #G3_Genes|Genomes|Genetics #biorxiv

A Cost-effective, High-throughput, Highly Accurate Genotyping Method for Outbred Populations. #Genotyping #GenotypingBySequencing #G3 academic.oup.com/g3journal/ad...

A chromosome-level genome assembly of the Peruvian Algarrobo (Neltuma pallida) provides insights on its adaptation to its unique ecological niche. #PeruvianAlgarrobo #ChromosomeLevelAssembly #G3 #Genomics academic.oup.com/g3journal/ad...

Genome sequence of the oyster mushroom Pleurotus ostreatus strain PC9 published as: https://t.co/3arJ0Vfal7 #G3_Genes|Genomes|Genetics #biorxiv

Application of an optimized annotation pipeline to the Cryptococcus deuterogattii genome reveals dynamic primary metabolic gene clusters and genomic impact of RNAi loss published as: https://t.co/vEHqGvcKtc #G3_Genes|Genomes|Genetics #biorxiv

Genome-wide quantitative trait loci mapping on Verticilliumw published as: https://t.co/aL9xrgSJIm #G3_Genes|Genomes|Genetics #biorxiv

EnvRtype: a software to interplay enviromics and quantitative genomics in agriculture published as: https://t.co/g1Q15yxOwp #G3_Genes|Genomes|Genetics #biorxiv

Characterization of a Large Pericentric Inversion in Plateau Fence Lizards ,(Sceloporus tristichus): Evidence from Chromosome-scale Genomes published as: https://t.co/U5oPdKtcwQ #G3_Genes|Genomes|Genetics #biorxiv

FlyORF-TaDa allows rapid generation of new lines for in vivo cell-type specific profiling of protein-DNA interactions in Drosophila melanogaster published as: https://t.co/8cBZp7Tthh #G3_Genes|Genomes|Genetics #biorxiv

De novo genome assembly of the Tobacco Hornworm moth (Manduca sexta) published as: https://t.co/zZHa6NtsQA #G3_Genes|Genomes|Genetics #biorxiv

Fast and inexpensive whole genome sequencing library preparation from intact yeast cells published as: https://t.co/ylS04lnRrm #G3_Genes|Genomes|Genetics #biorxiv

@MichelleLDeVore @BazziniLab (codon optimality/mRNA/gene regulation) https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkae247/7839828?login=false @Pantazis_Lab (Spontaneous Ramen microspectrometry) https://www.pnas.org/doi/10.1073/pnas.2404232121 (35/50)

In vivo transcriptome analysis provides insights into host-dependent expression of virulence factors by Yersinia entomophaga MH96, during infection of Galleria mellonella published as: https://t.co/LQ2FZzBg1z #G3_Genes|Genomes|Genetics #biorxiv

De Novo Assembly of a Chromosome-Scale Reference Genome for the Northern Flicker Colaptes auratus published as: https://t.co/6DdoJnhaKt #G3_Genes|Genomes|Genetics #biorxiv

Upload your genome and ddgRADer will suggest enzyme choices for the double-digest Restriction-site Associated DNA sequencing protocol (ddRAD-seq) to achieve a desired coverage of the genome, both in terms of number of loci and sequencing depth. The plot shows the predicted fragment size distribution

A cohort of Caenorhabditis species lacking the highly conserved let-7 microRNA published as: https://t.co/YDolSco9f6 #G3_Genes|Genomes|Genetics #biorxiv

Visualizing Population Structure with Variational Autoencoders published as: https://t.co/9XH9xe33e9 #G3_Genes|Genomes|Genetics #biorxiv

Genome analysis of Salmonella enterica serovar Typhimurium bacteriophage L, indicator for StySA (StyLT2III) restriction-modification system action published as: https://t.co/LwtfP5mZVB #G3_Genes|Genomes|Genetics #biorxiv

Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12 published as: https://t.co/ky21ozUnnp #G3_Genes|Genomes|Genetics #biorxiv

Establishment of a new sex-determining allele driven by sexually antagonistic selection published as: https://t.co/dj5LAQNMrJ #G3_Genes|Genomes|Genetics #biorxiv

Social Network Analysis of the Genealogy of Strawberry: Retracing the Wild Roots of Heirloom and Modern Cultivars published as: https://t.co/QQqyjdxKVk #G3_Genes|Genomes|Genetics #biorxiv

The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite published as: https://t.co/pzvvQZe5Le #G3_Genes|Genomes|Genetics #biorxiv

KH domain containing RNA-binding proteins coordinate with microRNAs to regulate Caenorhabditis elegans development published as: https://t.co/EcD00q1yaC #G3_Genes|Genomes|Genetics #biorxiv

Evolution of Chi motifs in Proteobacteria published as: https://t.co/6BRWvleKgF #G3_Genes|Genomes|Genetics #biorxiv

Sarah B. Carey, “The dynamic evolution of heteromorphic sex chromosomes in Cannabaceae” with updates to her work on hops doi.org/10.1093/g3journal/jkad216 and lots of unpublished work on hemp as well #ibc2024 #Botany

Impact of antibiotic perturbation on fecal viral communities in mice. - Anderson JM et al. - https://t.co/GKW5nU9Jkd #microbiome

Comparative genomics of lactobacillaceae from the gut of honey bees, apis mellifera, from the eastern us. - Bradford EL et al. - https://t.co/vEmw9BIrKN #microbiome

The future of fungi: threats and opportunities. - Case NT et al. - https://t.co/oHXGLercfq #microbiome

Comparison of read mapping and variant calling tools for the analysis of plant NGS data https://t.co/Ffl9HvYVlT Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification https://t.co/YoNriJpDm0 #Genomics

RT @bxv_genomics: Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identif…

Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification https://t.co/f5F71hnMGC

RT @biorxivpreprint: Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP iden…

Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification https://t.co/yHxOFqxkVb #biorxiv_genomic

Innovations in double digest restriction-site associated DNA sequencing (ddRAD-Seq) method for more efficient SNP identification https://t.co/ojbnihrQsD #bioRxiv

Identification of sample mix-ups and mixtures in microbiome data in diversity outbred mice. - Lobo AK et al. - https://t.co/RHeHyjk9Mu #microbiome

These exciting findings are some of the first to highlight how mutualisms with #bats may influence fruit trait evolution. But what about the other way around, you ask? Read @loloyohe recent paper on this same system to find out! 3/ https://doi.org/10.1093/g3journal/jkab260

985 Mb #genome assembly of the blue crab

Mediterranean corn borer

Application of a bioinformatic pipeline to rna-seq data identifies novel viruslike sequence in human blood. - Melnick M et al. - https://t.co/BqJTWkkCUY #microbiome

Application of a bioinformatic pipeline to rna-seq data identifies novel viruslike sequence in human blood. - Melnick M et al. - https://t.co/BqJTWkkCUY #microbiome

Population scale nucleic acid delivery to caenorhabditis elegans via electroporation. - Khodakova AS et al. - https://t.co/az9luAq3uW #microbiome

Metaprism: a versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data. - Kim J et al. - https://t.co/FXT9Pq3q3O #microbiome

Vagococcus fluvialis isolation and sequencing from urine of healthy cattle. - Giannattasio-Ferraz S et al. - https://t.co/DYktdbjmj2 #microbiome

RT @jsantoyo: Genotyping for Species Identification and Diversity Assessment Using Double-Digest Restriction Site-Associated DNA Sequencing…

Genotyping for Species Identification and Diversity Assessment Using Double-Digest Restriction Site-Associated DNA Sequencing (ddRAD-Seq). https://t.co/cAUOil1zJb