Publications by authors named "Limeng Pu"

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Seq2Karyotype (S2K): A Method for Karyotyping Using Single-Sample Whole-Genome Sequencing Data.
Limeng Pu, Karol Szlachta, Virginia Valentine, Meiling Jin, Sivaraman Natarajan, Daniel Putnam

bioRxiv· August 2025

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Machine Learning Techniques to Infer Protein Structure and Function from Sequences: A Comprehensive Review.
Gopal Srivastava, Mengmeng Liu, Xialong Ni, Limeng Pu, Michal Brylinski

Methods Mol Biol· November 2024

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Unlocking the Potential of Kinase Targets in Cancer: Insights from CancerOmicsNet, an AI-Driven Approach to Drug Response Prediction in Cancer.
Manali Singha, Limeng Pu, Gopal Srivastava, Xialong Ni, Brent A Stanfield

Cancers (Basel)· August 2023

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Artificial intelligence to guide precision anticancer therapy with multitargeted kinase inhibitors.
Manali Singha, Limeng Pu, Brent A Stanfield, Ifeanyi K Uche, Paul J F Rider

BMC Cancer· November 2022

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CancerOmicsNet: a multi-omics network-based approach to anti-cancer drug profiling.
Limeng Pu, Manali Singha, Jagannathan Ramanujam, Michal Brylinski

Oncotarget· September 2022

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GraphSite: Ligand Binding Site Classification with Deep Graph Learning.
Wentao Shi, Manali Singha, Limeng Pu, Gopal Srivastava, Jagannathan Ramanujam

Biomolecules· July 2022

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An integrated network representation of multiple cancer-specific data for graph-based machine learning.
Limeng Pu, Manali Singha, Hsiao-Chun Wu, Costas Busch, J Ramanujam

NPJ Syst Biol Appl· April 2022

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Pocket2Drug: An Encoder-Decoder Deep Neural Network for the Target-Based Drug Design.
Wentao Shi, Manali Singha, Gopal Srivastava, Limeng Pu, J Ramanujam

Front Pharmacol· March 2022

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GraphDTI: A robust deep learning predictor of drug-target interactions from multiple heterogeneous data.
Guannan Liu, Manali Singha, Limeng Pu, Prasanga Neupane, Joseph Feinstein

J Cheminform· August 2021

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BionoiNet: ligand-binding site classification with off-the-shelf deep neural network.
Wentao Shi, Jeffrey M Lemoine, Abd-El-Monsif A Shawky, Manali Singha, Limeng Pu

Bioinformatics· May 2020

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A Wearable Pulse Oximeter With Wireless Communication and Motion Artifact Tailoring for Continuous Use.
Pedro J Chacon, Limeng Pu, Tallis H da Costa, Young-Ho Shin, Taher Ghomian

IEEE Trans Biomed Eng· June 2019

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DeepDrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network.
Limeng Pu, Rajiv Gandhi Govindaraj, Jeffrey Mitchell Lemoine, Hsiao-Chun Wu, Michal Brylinski

PLoS Comput Biol· February 2019

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eToxPred: a machine learning-based approach to estimate the toxicity of drug candidates.
Limeng Pu, Misagh Naderi, Tairan Liu, Hsiao-Chun Wu, Supratik Mukhopadhyay

BMC Pharmacol Toxicol· January 2019

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Novel tailoring algorithm for abrupt motion artifact removal in photoplethysmogram signals.
Limeng Pu, Pedro J Chacon, Hsiao-Chun Wu, Jin-Woo Choi

Biomed Eng Lett· November 2017

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