Publications by authors named "Aaron Halpern"

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Illumina complete long read assay yields contiguous bacterial genomes from human gut metagenomes.
Dylan G Maghini, Yuya Kiguchi, Aaron E Darling, Leigh G Monahan, Aaron L Halpern

mSystems· August 2025

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Atypical free sialic acid storage disorder associated with tissue specific mosaicism of SLC17A5.
Marwan Shinawi, Daniel J Wegner, Alexander J Paul, William Buchser, Robert Schmidt, Aaron L Halpern

Mol Genet Metab· January 2025

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Three-dimensional single-cell transcriptome imaging of thick tissues.
Rongxin Fang, Aaron Halpern, Mohammed Mostafizur Rahman, Zhengkai Huang, Zhiyun Lei

Elife· December 2024

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Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome.
Daniall Masood, Luyao Ren, Cu Nguyen, Francesco G Brundu, Lily Zheng, Aaron Halpern

Genome Biol· June 2024

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Molecularly defined and spatially resolved cell atlas of the whole mouse brain.
Meng Zhang, Xingjie Pan, Won Jung, Aaron R Halpern, Stephen W Eichhorn

Nature· December 2023

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Biophysical Interactions Underpin the Emergence of Information in the Genetic Code.
Aaron Halpern, Lilly R Bartsch, Kaan Ibrahim, Stuart A Harrison, Minkoo Ahn

Life (Basel)· May 2023

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A molecularly defined and spatially resolved cell atlas of the whole mouse brain.
Meng Zhang, Xingjie Pan, Won Jung, Aaron Halpern, Stephen W Eichhorn

bioRxiv· March 2023

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A biophysical basis for the emergence of the genetic code in protocells.
Stuart A Harrison, Raquel Nunes Palmeira, Aaron Halpern, Nick Lane

Biochim Biophys Acta Bioenerg· November 2022

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A prebiotic basis for ATP as the universal energy currency.
Silvana Pinna, Cäcilia Kunz, Aaron Halpern, Stuart A Harrison, Sean F Jordan

PLoS Biol· October 2022

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Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH.
Rongxin Fang, Chenglong Xia, Jennie L Close, Meng Zhang, Jiang He, Aaron R Halpern

Science· July 2022

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CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis: A GeT-RM Collaborative Project.
Andrea Gaedigk, Erin C Boone, Steven E Scherer, Seung-Been Lee, Ibrahim Numanagić, Aaron L Halpern

J Mol Diagn· April 2022

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The Giardia ventrolateral flange is a lamellar membrane protrusion that supports attachment.
William R Hardin, Germain C M Alas, Nikita Taparia, Elizabeth B Thomas, Melissa C Steele-Ogus, Aaron R Halpern

PLoS Pathog· April 2022

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Fluorescent labeling of abundant reactive entities (FLARE) for cleared-tissue and super-resolution microscopy.
Min Yen Lee, Chenyi Mao, Adam K Glaser, Marcus A Woodworth, Aaron R Halpern

Nat Protoc· March 2022

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Versatile, do-it-yourself, low-cost spinning disk confocal microscope.
Aaron R Halpern, Min Yen Lee, Marco D Howard, Marcus A Woodworth, Philip R Nicovich

Biomed Opt Express· February 2022

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Spontaneous assembly of redox-active iron-sulfur clusters at low concentrations of cysteine.
Sean F Jordan, Ioannis Ioannou, Hanadi Rammu, Aaron Halpern, Lara K Bogart

Nat Commun· October 2021

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Multiplexed single-cell profiling of chromatin states at genomic loci by expansion microscopy.
Marcus A Woodworth, Kenneth K H Ng, Aaron R Halpern, Nicholas A Pease, Phuc H B Nguyen

Nucleic Acids Res· August 2021

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Spinal muscular atrophy diagnosis and carrier screening from genome sequencing data.
Xiao Chen, Alba Sanchis-Juan, Courtney E French, Andrew J Connell, Isabelle Delon, Aaron L Halpern

Genet Med· May 2020

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Feature-rich covalent stains for super-resolution and cleared tissue fluorescence microscopy.
Chenyi Mao, Min Yen Lee, Jing-Ru Jhan, Aaron R Halpern, Marcus A Woodworth

Sci Adv· May 2020

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Multi-immersion open-top light-sheet microscope for high-throughput imaging of cleared tissues.
Adam K Glaser, Nicholas P Reder, Ye Chen, Chengbo Yin, Linpeng Wei, Aaron R Halpern

Nat Commun· July 2019

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Strelka2: fast and accurate calling of germline and somatic variants.
Sangtae Kim, Konrad Scheffler, Aaron L Halpern, Mitchell A Bekritsky, Eunho Noh

Nat Methods· August 2018

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Volumetric, Nanoscale Optical Imaging of Mouse and Human Kidney via Expansion Microscopy.
Tyler J Chozinski, Chenyi Mao, Aaron R Halpern, Jeffrey W Pippin, Stuart J Shankland

Sci Rep· July 2018

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Extended-Depth 3D Super-Resolution Imaging Using Probe-Refresh STORM.
Danying Lin, Lauren A Gagnon, Marco D Howard, Aaron R Halpern, Joshua C Vaughan

Biophys J· April 2018

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Hybrid Structured Illumination Expansion Microscopy Reveals Microbial Cytoskeleton Organization.
Aaron R Halpern, Germain C M Alas, Tyler J Chozinski, Alexander R Paredez, Joshua C Vaughan

ACS Nano· December 2017

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Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
Fan Zhang, Lena Christiansen, Jerushah Thomas, Dmitry Pokholok, Ros Jackson, Aaron Halpern

Nat Biotechnol· September 2017

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Corrigendum: The tetrameric kinesin Kif25 suppresses pre-mitotic centrosome separation to establish proper spindle orientation.
Justin Decarreau, Michael Wagenbach, Eric Lynch, Aaron R Halpern, Joshua C Vaughan

Nat Cell Biol· May 2017

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