Publications by authors named "Ad Wiebenga"

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The FUNG-GROWTH database: linking fungal phenotype to genome.
Ronald P de Vries, Ad Wiebenga, Guillermo Aguilar Osorio, Maria Victoria Aguilar Pontes, Evy Battaglia

Microbiol Resour Announc· September 2025

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Comparative genomics of and section .
Sebastian Theobald, Tammi Vesth, Jane L Nybo, Jens C Frisvad, Inge Kjærbølling, Ad Wiebenga

Curr Res Microb Sci· January 2025

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Genomic Analysis of Section Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation.
Sebastian Theobald, Tammi C Vesth, Elena Geib, Jane L Nybo, Jens C Frisvad, Ad Wiebenga

J Fungi (Basel)· July 2024

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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi.
Li Xu, Jiajia Li, Victor M Gonzalez Ramos, Christina Lyra, Ad Wiebenga

Bioresour Technol· January 2024

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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi.
Jiajia Li, Ad Wiebenga, Anna Lipzen, Vivian Ng, Sravanthi Tejomurthula

J Fungi (Basel)· August 2023

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Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.
Paul Daly, Mao Peng, Hugh D Mitchell, Young-Mo Kim, Charles Ansong, Ad Wiebenga

Environ Microbiol· March 2020

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A comparative genomics study of 23 Aspergillus species from section Flavi.
Inge Kjærbølling, Tammi Vesth, Jens C Frisvad, Jane L Nybo, Sebastian Theobald, Ad Wiebenga

Nat Commun· February 2020

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Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers.
Aleksandrina Patyshakuliyeva, Daniel L Falkoski, Ad Wiebenga, Klaas Timmermans, Ronald P de Vries

Microorganisms· December 2019

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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network.
Claire Khosravi, Joanna E Kowalczyk, Tania Chroumpi, Evy Battaglia, Maria-Victoria Aguilar Pontes, Ad Wiebenga

BMC Genomics· November 2019

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Evolutionary Adaptation to Generate Mutants.
Ronald P de Vries, Ronnie Lubbers, Aleksandrina Patyshakuliyeva, Ad Wiebenga, Isabelle Benoit-Gelber

Methods Mol Biol· February 2019

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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.
Tammi C Vesth, Jane L Nybo, Sebastian Theobald, Jens C Frisvad, Thomas O Larsen, Ad Wiebenga

Nat Genet· December 2018

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Genomic and Genetic Insights Into a Cosmopolitan Fungus, (Eurotiales).
Andrew S Urquhart, Stephen J Mondo, Miia R Mäkelä, James K Hane, Ad Wiebenga

Front Microbiol· December 2018

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Physiological background of the remarkably high Cd tolerance of the Aspergillus fumigatus Af293 strain.
Vivien Kurucz, Beáta Kiss, Zsuzsa M Szigeti, Gábor Nagy, Erzsébet Orosz, Ad Wiebenga

J Basic Microbiol· November 2018

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Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail.
Paul Daly, Gillian G Slaghek, Sara Casado López, Ad Wiebenga, Kristiina S Hilden

J Microbiol Methods· December 2017

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High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.
Joanna E Kowalczyk, Claire Khosravi, Samuel Purvine, Alice Dohnalkova, William B Chrisler, Ad Wiebenga

Environ Microbiol· November 2017

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Secretion of small proteins is species-specific within Aspergillus sp.
Nicolas Valette, Isabelle Benoit-Gelber, Marcos Di Falco, Ad Wiebenga, Ronald P de Vries

Microb Biotechnol· March 2017

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Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Ronald P de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis

Genome Biol· February 2017

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Penicillium subrubescens is a promising alternative for Aspergillus niger in enzymatic plant biomass saccharification.
Miia R Mäkelä, Sadegh Mansouri, Ad Wiebenga, Johanna Rytioja, Ronald P de Vries

N Biotechnol· December 2016

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Protease and lipase activities of fungal and bacterial strains derived from an artisanal raw ewe's milk cheese.
Sebnem Ozturkoglu-Budak, Ad Wiebenga, Peter A Bron, Ronald P de Vries

Int J Food Microbiol· November 2016

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Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression.
Joanna E Kowalczyk, Birgit S Gruben, Evy Battaglia, Ad Wiebenga, Eline Majoor

PLoS One· June 2016

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Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.
Luis M Corrochano, Alan Kuo, Marina Marcet-Houben, Silvia Polaino, Asaf Salamov, Ad Wiebenga

Curr Biol· June 2016

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Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger.
Yanping Jiang, Alexandra Vivas Duarte, Joost van den Brink, Ad Wiebenga, Gen Zou

Biotechnol Lett· January 2016

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Closely related fungi employ diverse enzymatic strategies to degrade plant biomass.
Isabelle Benoit, Helena Culleton, Miaomiao Zhou, Marcos DiFalco, Guillermo Aguilar-Osorio, Ad Wiebenga

Biotechnol Biofuels· August 2015

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Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment.
Claire Veneault-Fourrey, Carine Commun, Annegret Kohler, Emmanuelle Morin, Raffaella Balestrini, Ad Wiebenga

Fungal Genet Biol· November 2014

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A genomic survey of proteases in Aspergilli.
Sebnem Ozturkoglu Budak, Miaomiao Zhou, Carlo Brouwer, Ad Wiebenga, Isabelle Benoit

BMC Genomics· June 2014

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