Publications by authors named "Adam Charles"

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CUSP: Complex spike sorting from multi-electrode array recordings with U-net sequence-to-sequence prediction.
Chenhao Bao, Robyn L Mildren, Adam S Charles, Kathleen E Cullen

J Neurosci Methods· February 2026

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SLAy-ing oversplitting errors in high-density electrophysiology spike sorting.
Sai Koukuntla, Tate DeWeese, Alexandra Cheng, Robyn Mildren, Aamna Lawrence, Adam S Charles

bioRxiv· November 2025

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Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed.
Kyle A Johnsen, Nathanael A Cruzado, Zachary C Menard, Adam A Willats, Adam S Charles

J Neurosci· November 2025

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CUSP: Complex Spike Sorting from Multi-electrode Array Recordings with U-net Sequence-to-Sequence Prediction.
Chenhao Bao, Robyn Mildren, Adam S Charles, Kathleen E Cullen

bioRxiv· November 2025

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Continuous partitioning of neuronal variability.
Anuththara Rupasinghe, Adam S Charles, Jonathan W Pillow

bioRxiv· October 2025

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Uncertainty-Gated Min-Cost Flows for NanoScale Synaptic Plasticity Tracking.
Shashwat Kumar, Gabrielle I Coste, Dasun Premathilaka, Richard L Huganir, Austin R Graves, Adam S Charles

bioRxiv· October 2025

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Improved inference of latent neural states from calcium imaging data.
Stephen Keeley, David Zoltowski, Adam Charles, Jonathan Pillow

bioRxiv· October 2025

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Bridging model and experiment in systems neuroscience with Cleo: the Closed-Loop, Electrophysiology, and Optophysiology simulation testbed.
Kyle A Johnsen, Nathanael A Cruzado, Zachary C Menard, Adam A Willats, Adam S Charles

bioRxiv· August 2025

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Decomposed Linear Dynamical Systems (dLDS) models reveal instantaneous, context-dependent dynamic connectivity in C. elegans.
Eva Yezerets, Noga Mudrik, Adam S Charles

Commun Biol· August 2025

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Precise Extraction of Neural Motifs Reveals Multiscale, Parallel Encoding Schemes in Auditory Cortex.
Liang Xiang, Mingxuan Wang, Patrick O Kanold, Adam Charles

bioRxiv· August 2025

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Fast Two-photon Microscopy by Neuroimaging with Oblong Random Acquisition (NORA).
Esther Whang, Skyler Thomas, Ji Yi, Adam S Charles

ArXiv· June 2025

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Automatic detection of fluorescently labeled synapses in volumetric in vivo imaging data.
Zhining Chen, Gabrielle I Coste, Evan Li, Richard L Huganir, Austin R Graves, Adam S Charles

bioRxiv· January 2025

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Sparse-Coding Variational Autoencoders.
Victor Geadah, Gabriel Barello, Daniel Greenidge, Adam S Charles, Jonathan W Pillow

Neural Comput· November 2024

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Multi-day neuron tracking in high-density electrophysiology recordings using earth mover's distance.
Augustine Xiaoran Yuan, Jennifer Colonell, Anna Lebedeva, Michael Okun, Adam S Charles

Elife· July 2024

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Localizing the Seizure Onset Zone with Bayesian Learning During iEEG Monitoring.
Amir Hossein Daraie, Adam Charles, Alana Chandler, Luis Sanchez, Joon-Yi Kang

Annu Int Conf IEEE Eng Med Biol Soc· July 2024

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Cellular-Resolution Image-Guided Localization in the Primate Brain.
Jacob Stefanowicz, John S Choi, Katie Wingel, Jarl Haggerty, Adam S Charles

Annu Int Conf IEEE Eng Med Biol Soc· July 2024

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Exploration of a Network-Based EEG Marker for Major Depressive Disorder.
Clara Lemaitre, Adam Charles, Sridevi V Sarma

Annu Int Conf IEEE Eng Med Biol Soc· July 2024

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Multi-day Neuron Tracking in High Density Electrophysiology Recordings using EMD.
Augustine Xiaoran Yuan, Jennifer Colonell, Anna Lebedeva, Michael Okun, Adam S Charles

bioRxiv· April 2024

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Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks.
Ahmed El Hady, Daniel Takahashi, Ruolan Sun, Oluwateniola Akinwale, Tyler Boyd-Meredith, Adam S Charles

J Neurosci Methods· March 2024

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Revealing abrupt transitions from goal-directed to habitual behavior.
Sharlen Moore, Zyan Wang, Ziyi Zhu, Ruolan Sun, Angel Lee, Adam Charles

bioRxiv· July 2023

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Cross-modality supervised image restoration enables nanoscale tracking of synaptic plasticity in living mice.
Yu Kang T Xu, Austin R Graves, Gabrielle I Coste, Richard L Huganir, Dwight E Bergles, Adam S Charles

Nat Methods· June 2023

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Review of data processing of functional optical microscopy for neuroscience.
Hadas Benisty, Alexander Song, Gal Mishne, Adam S Charles

Neurophotonics· October 2022

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GraFT: Graph Filtered Temporal Dictionary Learning for Functional Neural Imaging.
Adam S Charles, Nathan Cermak, Rifqi O Affan, Benjamin B Scott, Jackie Schiller

IEEE Trans Image Process· May 2022

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Detecting and correcting false transients in calcium imaging.
Jeffrey L Gauthier, Sue Ann Koay, Edward H Nieh, David W Tank, Jonathan W Pillow, Adam S Charles

Nat Methods· April 2022

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Sequential and efficient neural-population coding of complex task information.
Sue Ann Koay, Adam S Charles, Stephan Y Thiberge, Carlos D Brody, David W Tank

Neuron· January 2022

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