Publications by authors named "Adam Diehl"

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Fast and Accurate Draft Genome Patching with GPatch.
Adam Diehl, Alan Boyle

bioRxiv· May 2025

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HaplotagLR: An efficient and configurable utility for haplotagging long reads.
Monica J Holmes, Babak Mahjour, Christopher P Castro, Gregory A Farnum, Adam G Diehl

PLoS One· March 2024

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Sperm chromatin structure and reproductive fitness are altered by substitution of a single amino acid in mouse protamine 1.
Lindsay Moritz, Samantha B Schon, Mashiat Rabbani, Yi Sheng, Ritvija Agrawal, Adam G Diehl

Nat Struct Mol Biol· August 2023

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Challenges in screening for noncoding variants contributing to genetically complex phenotypes.
Christopher P Castro, Adam G Diehl, Alan P Boyle

HGG Adv· July 2023

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Multiplexed long-read plasmid validation and analysis using OnRamp.
Camille Mumm, Melissa L Drexel, Torrin L McDonald, Adam G Diehl, Jessica A Switzenberg

Genome Res· May 2023

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LRphase: an efficient method for assigning haplotype identity to long reads.
Monica J Holmes, Babak Mahjour, Christopher P Castro, Gregory A Farnum, Adam G Diehl

bioRxiv· January 2023

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KRAS Mutation Variants and Co-occurring PI3K Pathway Alterations Impact Survival for Patients with Pancreatic Ductal Adenocarcinomas.
Adam C Diehl, Lindsay M Hannan, David B Zhen, Andrew L Coveler, Gentry King

Oncologist· December 2022

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HEYL Regulates Neoangiogenesis Through Overexpression in Both Breast Tumor Epithelium and Endothelium.
Liangfeng Han, Preethi Korangath, Nguyen K Nguyen, Adam Diehl, Soonweng Cho

Front Oncol· January 2021

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MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony.
Adam G Diehl, Alan P Boyle

BMC Bioinformatics· September 2020

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Management of primary hepatic malignancies during the COVID-19 pandemic: recommendations for risk mitigation from a multidisciplinary perspective.
Aisling Barry, Smith Apisarnthanarax, Grainne M O'Kane, Gonzalo Sapisochin, Robert Beecroft, Adam Diehl

Lancet Gastroenterol Hepatol· August 2020

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Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes.
Adam G Diehl, Ningxin Ouyang, Alan P Boyle

Nat Commun· April 2020

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CGIMP: Real-time exploration and covariate projection for self-organizing map datasets.
Adam G Diehl, Alan P Boyle

J Open Source Softw· July 2019

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Conserved and species-specific transcription factor co-binding patterns drive divergent gene regulation in human and mouse.
Adam G Diehl, Alan P Boyle

Nucleic Acids Res· February 2018

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Relationships between lymphocyte counts and treatment-related toxicities and clinical responses in patients with solid tumors treated with PD-1 checkpoint inhibitors.
Adam Diehl, Mark Yarchoan, Alex Hopkins, Elizabeth Jaffee, Stuart A Grossman

Oncotarget· December 2017

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Evaluating the Accuracy of Sampling Strategies for Estimation of Compliance Rate for Ventilator-Associated Pneumonia Process Measures.
Adam Diehl, Ting Yang, Kathleen Speck, James Battles, Sara E Cosgrove

Infect Control Hosp Epidemiol· September 2016

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Deciphering ENCODE.
Adam G Diehl, Alan P Boyle

Trends Genet· April 2016

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An atypical 0.73 MB microduplication of 22q11.21 and a novel SALL4 missense mutation associated with thumb agenesis and radioulnar synostosis.
Adam Diehl, Weiyi Mu, Denise Batista, Meral Gunay-Aygun

Am J Med Genet A· July 2015

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Horizontal integration of OMIM across the medical school preclinical curriculum for early reinforcement of clinical genetics principles.
Adam C Diehl, Lauren Reader, Ada Hamosh, Joann N Bodurtha

Genet Med· February 2015

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The Notch pathway inhibits TGFβ signaling in breast cancer through HEYL-mediated crosstalk.
Liangfeng Han, Adam Diehl, Nguyen K Nguyen, Preethi Korangath, Weiwen Teo

Cancer Res· November 2014

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Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway.
Nina Heldring, Gary D Isaacs, Adam G Diehl, Miao Sun, Edwin Cheung

Mol Endocrinol· April 2011

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Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.
Ying Wang, Adam Diehl, Feinan Wu, Julia Vrebalov, James Giovannoni

Genetics· September 2008

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Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.
Miltiadis Kininis, Benjamin S Chen, Adam G Diehl, Gary D Isaacs, Tong Zhang

Mol Cell Biol· July 2007

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Extraocular muscle morphogenesis and gene expression are regulated by Pitx2 gene dose.
Adam G Diehl, Sepideh Zareparsi, Min Qian, Ritu Khanna, Rowena Angeles

Invest Ophthalmol Vis Sci· May 2006

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