Publications by authors named "Adam Phillippy"

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C
Chromosome-specific epigenetic control and transmission of ribosomal DNA arrays in Hominidae genomes.
Tamara A Potapova, Paxton Kostos, Sean McKinney, Matthew Borchers, Jeff Haug, Adam M Phillippy

Cell Genom· December 2025

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Finishing a complete giraffe genome from telomere to telomere with Verkko-Fillet.
Juhyun Kim, Benjamin D Rosen, Sarah E Fumagalli, Kristen L Kuhn, Amy Long, Adam M Phillippy

bioRxiv· December 2025

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Human acrocentric chromosome short arm mutation and recombination.
Jiadong Lin, F Kumara Mastrorosa, Michelle D Noyes, DongAhn Yoo, Arang Rhie, Adam M Phillippy

bioRxiv· December 2025

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The formation and propagation of human Robertsonian chromosomes.
Leonardo Gomes de Lima, Andrea Guarracino, Sergey Koren, Tamara Potapova, Sean McKinney, Adam M Phillippy

Nature· November 2025

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Complete assembly and re-annotation of the zebrafish genome.
Javan Okendo, Sergey Koren, Arang Rhie, Aranza Torrado-Tapias, Brandon D Pickett, Adam M Phillippy

bioRxiv· November 2025

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Analysis of a Novel Human Protein, ORF3, Encoded by Spacer rDNA.
Yaohui Chen, Jung-Hyun Kim, Hee-Sheung Lee, Sergey Koren, Vladimir Larionov, Adam M Phillippy

J Mol Evol· October 2025

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Protamine lacunae preserve the paternal chromatin landscape in sperm.
Thomas W Tullius, Rachel A Heuer, Stephanie C Bohaczuk, Ben Mallory, Danilo Dubocanin, Adam M Phillippy

bioRxiv· October 2025

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Author Correction: Complex genetic variation in nearly complete human genomes.
Glennis A Logsdon, Peter Ebert, Peter A Audano, Mark Loftus, David Porubsky, Adam M Phillippy

Nature· September 2025

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A complete diploid human genome benchmark for personalized genomics.
Nancy F Hansen, Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Adam M Phillippy

bioRxiv· September 2025

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Complex genetic variation in nearly complete human genomes.
Glennis A Logsdon, Peter Ebert, Peter A Audano, Mark Loftus, David Porubsky, Adam M Phillippy

Nature· August 2025

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A complete and near-perfect rhesus macaque reference genome: lessons from subtelomeric repeats and sequencing bias.
Shilong Zhang, Ning Xu, Yong Lu, Yanhong Nie, Zhengtong Li, Adam M Phillippy

bioRxiv· August 2025

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Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding.
Dmitry Antipov, Mikko Rautiainen, Sergey Nurk, Brian P Walenz, Steven J Solar, Adam M Phillippy

Genome Res· July 2025

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Complete sequencing of ape genomes.
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Adam M Phillippy

Nature· May 2025

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Integrated analysis of the complete sequence of a macaque genome.
Shilong Zhang, Ning Xu, Lianting Fu, Xiangyu Yang, Kaiyue Ma, Adam M Phillippy

Nature· April 2025

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Chromosome-level echidna genome illuminates evolution of multiple sex chromosome system in monotremes.
Yang Zhou, Jiazheng Jin, Xuemei Li, Gregory Gedman, Sarah Pelan, Adam M Phillippy

Gigascience· January 2025

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Long-read sequencing of hundreds of diverse brains provides insight into the impact of structural variation on gene expression and DNA methylation.
Kimberley J Billingsley, Melissa Meredith, Kensuke Daida, Pilar Alvarez Jerez, Shloka Negi, Adam M Phillippy

bioRxiv· December 2024

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Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Sergey Koren, Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Adam M Phillippy

Genome Res· November 2024

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Complete sequencing of ape genomes.
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Adam M Phillippy

bioRxiv· October 2024

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Epigenetic control and inheritance of rDNA arrays.
Tamara Potapova, Paxton Kostos, Sean McKinney, Matthew Borchers, Jeff Haug, Adam M Phillippy

bioRxiv· September 2024

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C
Complex genetic variation in nearly complete human genomes.
Glennis A Logsdon, Peter Ebert, Peter A Audano, Mark Loftus, David Porubsky, Adam M Phillippy

bioRxiv· September 2024

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The formation and propagation of human Robertsonian chromosomes.
Leonardo Gomes de Lima, Andrea Guarracino, Sergey Koren, Tamara Potapova, Sean McKinney, Adam M Phillippy

bioRxiv· September 2024

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The Ruminant Telomere-to-Telomere (RT2T) Consortium.
Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa, Adam M Phillippy

Nat Genet· August 2024

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ModDotPlot-rapid and interactive visualization of tandem repeats.
Alexander P Sweeten, Michael C Schatz, Adam M Phillippy

Bioinformatics· August 2024

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The complete sequence and comparative analysis of ape sex chromosomes.
Kateryna D Makova, Brandon D Pickett, Robert S Harris, Gabrielle A Hartley, Monika Cechova, Adam M Phillippy

Nature· June 2024

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Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
Bryce Kille, Michael G Nute, Victor Huang, Eddie Kim, Adam M Phillippy

Bioinformatics· May 2024

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