Publications by authors named "Stephanie D McKay"

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Tissue-specific isoform usage and gene expression revealed through RNA-seq and ATAC-seq in developing cattle.
Sarem F Khilji, Shangqian Xie, Gabrielle M Becker, Katie A Shira, Morgan R Stegemiller, Stephanie D McKay

BMC Genomics· November 2025

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Publisher Correction: Analyzing the relationship of RNA and DNA methylation with gene expression.
Shangqian Xie, Darren Hagen, Gabrielle M Becker, Kimberly M Davenport, Katie A Shira, Stephanie D McKay

Genome Biol· June 2025

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Analyzing the relationship of RNA and DNA methylation with gene expression.
Shangqian Xie, Darren Hagen, Gabrielle M Becker, Kimberly M Davenport, Katie A Shira, Stephanie D McKay

Genome Biol· May 2025

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The Ruminant Telomere-to-Telomere (RT2T) Consortium.
Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa

Nat Genet· August 2024

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Current challenges and future of agricultural genomes to phenomes in the USA.
Christopher K Tuggle, Jennifer L Clarke, Brenda M Murdoch, Eric Lyons, Nicole M Scott, Stephanie D McKay

Genome Biol· January 2024

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AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes.
Deborah A Triant, Amy T Walsh, Gabrielle A Hartley, Bruna Petry, Morgan R Stegemiller, Stephanie D McKay

Mamm Genome· September 2023

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Characterizing Genetic Regulatory Elements in Ovine Tissues.
Kimberly M Davenport, Alisha T Massa, Suraj Bhattarai, Stephanie D McKay, Michelle R Mousel

Front Genet· May 2021

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Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation.
Mariângela B C Maldonado, Nelson B de Rezende Neto, Sheila T Nagamatsu, Marcelo F Carazzolle, Jesse L Hoff, Stephanie D McKay

PLoS One· March 2020

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De novo assembly of the cattle reference genome with single-molecule sequencing.
Benjamin D Rosen, Derek M Bickhart, Robert D Schnabel, Sergey Koren, Christine G Elsik, Stephanie D McKay

Gigascience· March 2020

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A Vision for Development and Utilization of High-Throughput Phenotyping and Big Data Analytics in Livestock.
James E Koltes, John B Cole, Roxanne Clemmens, Ryan N Dilger, Luke M Kramer, Stephanie D McKay

Front Genet· December 2019

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Transgenerational effects of insecticides-implications for rapid pest evolution in agroecosystems.
Kristian Brevik, Leena Lindström, Stephanie D McKay, Yolanda H Chen

Curr Opin Insect Sci· April 2018

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A SNP resource for studying North American moose.
Theodore S Kalbfleisch, Brenda M Murdoch, Timothy P L Smith, James D Murdoch, Michael P Heaton, Stephanie D McKay

F1000Res· January 2018

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Genome-wide analysis of DNA methylation in hypothalamus and ovary of Capra hircus.
Stefano Frattini, Emanuele Capra, Barbara Lazzari, Stephanie D McKay, Beatrice Coizet

BMC Genomics· June 2017

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The expression of RUNDC3B is associated with promoter methylation in lymphoid malignancies.
Dane W Burmeister, Emily H Smith, Robert T Cristel, Stephanie D McKay, Huidong Shi

Hematol Oncol· March 2017

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Integrated methylome and transcriptome analysis reveals novel regulatory elements in pediatric acute lymphoblastic leukemia.
Md Almamun, Benjamin T Levinson, Annette C van Swaay, Nathan T Johnson, Stephanie D McKay

Epigenetics· June 2016

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Differential responsiveness of Holstein and Angus dermal fibroblasts to LPS challenge occurs without major differences in the methylome.
Aimee L Benjamin, Benjamin B Green, Brian A Crooker, Stephanie D McKay, David E Kerr

BMC Genomics· March 2016

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Age dependent changes in the LPS induced transcriptome of bovine dermal fibroblasts occurs without major changes in the methylome.
Benjamin B Green, Stephanie D McKay, David E Kerr

BMC Genomics· January 2015

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Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.
Jared E Decker, Stephanie D McKay, Megan M Rolf, Jaewoo Kim, Antonio Molina Alcalá

PLoS Genet· March 2014

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Education: scientists need leadership training.
Marina Kvaskoff, Stephanie D McKay

Nature· February 2014

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Detection of selective sweeps in cattle using genome-wide SNP data.
Holly R Ramey, Jared E Decker, Stephanie D McKay, Megan M Rolf, Robert D Schnabel

BMC Genomics· June 2013

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Characterization of the rat developmental liver transcriptome.
Richard H Chapple, Polyana C Tizioto, Kevin D Wells, Scott A Givan, JaeWoo Kim, Stephanie D McKay

Physiol Genomics· April 2013

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A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits.
Jared E Decker, Daniel A Vasco, Stephanie D McKay, Matthew C McClure, Megan M Rolf

BMC Genomics· November 2012

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Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation.
Mahdi Saatchi, Mathew C McClure, Stephanie D McKay, Megan M Rolf, JaeWoo Kim

Genet Sel Evol· November 2011

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A truncating mutation in ATP13A2 is responsible for adult-onset neuronal ceroid lipofuscinosis in Tibetan terriers.
Fabiana H G Farias, Rong Zeng, Gary S Johnson, Fred A Wininger, Jeremy F Taylor, Stephanie D McKay

Neurobiol Dis· June 2011

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Evaluation of approaches for identifying population informative markers from high density SNP chips.
Samantha Wilkinson, Pamela Wiener, Alan L Archibald, Andy Law, Robert D Schnabel, Stephanie D McKay

BMC Genet· May 2011

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