Publications by authors named "Peter Ebert"

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Author Correction: Complex genetic variation in nearly complete human genomes.
Glennis A Logsdon, Peter Ebert, Peter A Audano, Mark Loftus, David Porubsky

Nature· September 2025

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Large-scale statistical mapping of T-cell receptor sequences to human leukocyte antigens.
H Jabran Zahid, Ruth Taniguchi, Peter Ebert, I-Ting Chow, Chris Gooley

Front Immunol· September 2025

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A complete diploid human genome benchmark for personalized genomics.
Nancy F Hansen, Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Peter Ebert

bioRxiv· September 2025

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Complex genetic variation in nearly complete human genomes.
Glennis A Logsdon, Peter Ebert, Peter A Audano, Mark Loftus, David Porubsky

Nature· August 2025

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Human de novo mutation rates from a four-generation pedigree reference.
David Porubsky, Harriet Dashnow, Thomas A Sasani, Glennis A Logsdon, Pille Hallast, Peter Ebert

Nature· July 2025

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Magnitude and dynamics of the T-cell response to SARS-CoV-2 infection at both individual and population levels.
Thomas M Snyder, Rachel M Gittelman, Mark Klinger, Damon H May, Edward J Osborne, Peter Ebert

Front Immunol· May 2025

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Graphasing: phasing diploid genome assembly graphs with single-cell strand sequencing.
Mir Henglin, Maryam Ghareghani, William T Harvey, David Porubsky, Sergey Koren, Peter Ebert

Genome Biol· October 2024

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Complex genetic variation in nearly complete human genomes.
Glennis A Logsdon, Peter Ebert, Peter A Audano, Mark Loftus, David Porubsky

bioRxiv· September 2024

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A familial, telomere-to-telomere reference for human mutation and recombination from a four-generation pedigree.
David Porubsky, Harriet Dashnow, Thomas A Sasani, Glennis A Logsdon, Pille Hallast, Peter Ebert

bioRxiv· August 2024

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Systematic discovery of neoepitope-HLA pairs for neoantigens shared among patients and tumor types.
Hem R Gurung, Amy J Heidersbach, Martine Darwish, Pamela Pui Fung Chan, Jenny Li, Peter J R Ebert

Nat Biotechnol· July 2024

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Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing.
Mir Henglin, Maryam Ghareghani, William Harvey, David Porubsky, Sergey Koren, Peter Ebert

bioRxiv· June 2024

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Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall.
William T Harvey, Peter Ebert, Jana Ebler, Peter A Audano, Katherine M Munson

Genome Res· December 2023

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Multimodal, broadly neutralizing antibodies against SARS-CoV-2 identified by high-throughput native pairing of BCRs from bulk B cells.
Gladys J Keitany, Benjamin E R Rubin, Meghan E Garrett, Andrea Musa, Jeff Tracy, Peter Ebert

Cell Chem Biol· November 2023

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Assembly of 43 human Y chromosomes reveals extensive complexity and variation.
Pille Hallast, Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A Audano

Nature· September 2023

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Alterations in the hepatocyte epigenetic landscape in steatosis.
Ranjan Kumar Maji, Beate Czepukojc, Michael Scherer, Sascha Tierling, Cristina Cadenas, Peter Ebert

Epigenetics Chromatin· July 2023

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A draft human pangenome reference.
Wen-Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Peter Ebert

Nature· May 2023

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Whole-genome long-read sequencing downsampling and its effect on variant calling precision and recall.
William T Harvey, Peter Ebert, Jana Ebler, Peter A Audano, Katherine M Munson

bioRxiv· May 2023

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Gaps and complex structurally variant loci in phased genome assemblies.
David Porubsky, Mitchell R Vollger, William T Harvey, Allison N Rozanski, Peter Ebert

Genome Res· April 2023

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Semi-automated assembly of high-quality diploid human reference genomes.
Erich D Jarvis, Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Peter Ebert

Nature· November 2022

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Read-Based Phasing and Analysis of Phased Variants with WhatsHap.
Marcel Martin, Peter Ebert, Tobias Marschall

Methods Mol Biol· November 2022

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Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders.
David Porubsky, Wolfram Höps, Hufsah Ashraf, PingHsun Hsieh, Bernardo Rodriguez-Martin, Peter Ebert

Cell· May 2022

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Benchmarking challenging small variants with linked and long reads.
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Peter Ebert

Cell Genom· May 2022

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Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes.
Jana Ebler, Peter Ebert, Wayne E Clarke, Tobias Rausch, Peter A Audano

Nat Genet· April 2022

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ASHLEYS: automated quality control for single-cell Strand-seq data.
Christina Gros, Ashley D Sanders, Jan O Korbel, Tobias Marschall, Peter Ebert

Bioinformatics· October 2021

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Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Peter Ebert, Peter A Audano, Qihui Zhu, Bernardo Rodriguez-Martin, David Porubsky

Science· April 2021

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