Publications by authors named "Addie Thompson"

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Fifteenth century CE Bolivian maize reveals genetic affinities with ancient Peruvian maize.
Huan Chen, Amy Baetsen-Young, Addie Thompson, Brad Day, Thelma Madzima

Elife· November 2025

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Genomic and hyperspectral imaging-based prediction blending enables selection for reduced deoxynivalenol content in wheat grains.
Jonathan S Concepcion, Amanda D Noble, Addie M Thompson, Yanhong Dong, Eric L Olson

G3 (Bethesda)· October 2025

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Phenotypic plasticity in maize grain yield: Genetic and environmental insights of response to environmental gradients.
Fatma Ozair, Alper Adak, Seth C Murray, Ryan T Alpers, Alejandro C Aviles, Addie Thompson

Plant Genome· September 2025

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Genetic and Environmental Patterns Underlying Phenotypic Plasticity in Flowering Time and Plant Height in Sorghum.
Jialu Wei, Tingting Guo, Qi Mu, Boris M E Alladassi, Ravi V Mural, Addie M Thompson

Plant Cell Environ· April 2025

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Unveiling shared genetic regulators of plant architectural and biomass yield traits in the Sorghum Association Panel.
Anuradha Singh, Linsey Newton, James C Schnable, Addie M Thompson

J Exp Bot· April 2025

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PyBrOpS: a Python package for breeding program simulation and optimization for multi-objective breeding.
Robert Z Shrote, Addie M Thompson

G3 (Bethesda)· October 2024

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Genomic regions influencing the hyperspectral phenome of deoxynivalenol infected wheat.
Jonathan S Concepcion, Amanda D Noble, Addie M Thompson, Yanhong Dong, Eric L Olson

Sci Rep· August 2024

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Genome-Wide Association Study of Cuticle and Lipid Droplet Properties of Cucumber ( L.) Fruit.
Stephanie Rett-Cadman, Yiqun Weng, Zhangjun Fei, Addie Thompson, Rebecca Grumet

Int J Mol Sci· August 2024

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Population-level gene expression can repeatedly link genes to functions in maize.
J Vladimir Torres-Rodríguez, Delin Li, Jonathan Turkus, Linsey Newton, Jensina Davis, Addie M Thompson

Plant J· July 2024

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Multiscale physiological responses to nitrogen supplementation of maize hybrids.
Sheng Ying, Brandon Webster, Lina Gomez-Cano, Kiran-Kumar Shivaiah, Qianjie Wang, Addie Thompson

Plant Physiol· April 2024

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Current challenges and future of agricultural genomes to phenomes in the USA.
Christopher K Tuggle, Jennifer L Clarke, Brenda M Murdoch, Eric Lyons, Nicole M Scott, Addie M Thompson

Genome Biol· January 2024

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Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants.
Sourabh Palande, Joshua A M Kaste, Miles D Roberts, Kenia Segura Abá, Carly Claucherty, Addie M Thompson

PLoS Biol· December 2023

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Leveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America.
Marco Lopez-Cruz, Fernando M Aguate, Jacob D Washburn, Natalia de Leon, Shawn M Kaeppler, Addie Thompson

Nat Commun· October 2023

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2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative.
Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Alden Perkins, Dylan L Schoemaker, Addie Thompson

BMC Res Notes· September 2023

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Genomes to Fields 2022 Maize genotype by Environment Prediction Competition.
Dayane Cristina Lima, Jacob D Washburn, José Ignacio Varela, Qiuyue Chen, Joseph L Gage, Addie Thompson

BMC Res Notes· July 2023

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2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project.
Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A McFarland, Shawn Kaeppler, Addie Thompson

BMC Genom Data· May 2023

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Yield prediction through integration of genetic, environment, and management data through deep learning.
Daniel R Kick, Jason G Wallace, James C Schnable, Judith M Kolkman, Barış Alaca, Addie Thompson

G3 (Bethesda)· April 2023

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Cross-species predictive modeling reveals conserved drought responses between maize and sorghum.
Jeremy Pardo, Ching Man Wai, Maxwell Harman, Annie Nguyen, Karl A Kremling, Addie M Thompson

Proc Natl Acad Sci U S A· March 2023

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Association mapping across a multitude of traits collected in diverse environments in maize.
Ravi V Mural, Guangchao Sun, Marcin Grzybowski, Michael C Tross, Hongyu Jin, Addie M Thompson

Gigascience· August 2022

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Designing Experiments for Physiological Phenomics.
Addie Thompson, Michael Kantar, Katy Rainey

Methods Mol Biol· July 2022

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SNP-Based Genome-Wide Association Mapping of Pollen Viability Under Heat Stress in Tropical L. Inbred Lines.
Zubair Ahmed, Maria Khalid, Abdul Ghafoor, Muhammad Kausar Nawaz Shah, Ghazala Kaukab Raja, Addie M Thompson

Front Genet· March 2022

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Utilizing MIKC-type MADS-box protein SOC1 for yield potential enhancement in maize.
Guo-Qing Song, Xue Han, John T Ryner, Addie Thompson, Kan Wang

Plant Cell Rep· September 2021

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The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment.
Anna R Rogers, Jeffrey C Dunne, Cinta Romay, Martin Bohn, Edward S Buckler, Addie Thompson

G3 (Bethesda)· February 2021

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Meiotic crossovers characterized by haplotype-specific chromosome painting in maize.
Lívia do Vale Martins, Fan Yu, Hainan Zhao, Tesia Dennison, Nick Lauter, Addie Thompson

Nat Commun· October 2019

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Simultaneous Parameter Learning and Bi-clustering for Multi-Response Models.
Ming Yu, Karthikeyan Natesan Ramamurthy, Addie Thompson, Aurélie C Lozano

Front Big Data· August 2019

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