Publications by authors named "Jacob D Washburn"

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Mesopolyploidy as a taxonomic clade marker for Brassica and relatives (tribe Brassiceae).
Shawn K Thomas, R Shawn Abrahams, Daniel Robert Kick, Nora Walden, Gavin Conant, Jacob D Washburn

Ann Bot· August 2025

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Designing a nitrogen-efficient cold-tolerant maize for modern agricultural systems.
Jonathan Odilón Ojeda-Rivera, Allison C Barnes, Elizabeth A Ainsworth, Ruthie Angelovici, Bruno Basso, Jacob D Washburn

Plant Cell· July 2025

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Improving plant breeding through AI-supported data integration.
Worasit Sangjan, Daniel R Kick, Jacob D Washburn

Theor Appl Genet· June 2025

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Global genotype by environment prediction competition reveals that diverse modeling strategies can deliver satisfactory maize yield estimates.
Jacob D Washburn, José Ignacio Varela, Alencar Xavier, Qiuyue Chen, David Ertl

Genetics· February 2025

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Trait association and prediction through integrative k-mer analysis.
Cheng He, Jacob D Washburn, Nathaniel Schleif, Yangfan Hao, Heidi Kaeppler

Plant J· October 2024

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Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates.
Jacob D Washburn, José Ignacio Varela, Alencar Xavier, Qiuyue Chen, David Ertl

bioRxiv· September 2024

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Deciphering temporal growth patterns in maize: integrative modeling of phenotype dynamics and underlying genomic variations.
Alper Adak, Seth C Murray, Jacob D Washburn

New Phytol· April 2024

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GWAS analysis of maize host plant resistance to western corn rootworm (Coleoptera: Chrysomelidae) reveals candidate small effect loci for resistance breeding.
Jacob D Washburn, Harper F LaFond, Martian C Lapadatescu, Adriano E Pereira, Matthias Erb

J Econ Entomol· December 2023

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Leveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America.
Marco Lopez-Cruz, Fernando M Aguate, Jacob D Washburn, Natalia de Leon, Shawn M Kaeppler

Nat Commun· October 2023

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2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative.
Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Alden Perkins, Dylan L Schoemaker, Jacob D Washburn

BMC Res Notes· September 2023

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RootBot: High-throughput root stress phenotyping robot.
Mia Ruppel, Sven K Nelson, Grace Sidberry, Madison Mitchell, Daniel Kick, Jacob D Washburn

Appl Plant Sci· August 2023

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Genomes to Fields 2022 Maize genotype by Environment Prediction Competition.
Dayane Cristina Lima, Jacob D Washburn, José Ignacio Varela, Qiuyue Chen, Joseph L Gage

BMC Res Notes· July 2023

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2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project.
Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Bridget A McFarland, Shawn Kaeppler, Jacob D Washburn

BMC Genom Data· May 2023

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Yield prediction through integration of genetic, environment, and management data through deep learning.
Daniel R Kick, Jason G Wallace, James C Schnable, Judith M Kolkman, Barış Alaca, Jacob D Washburn

G3 (Bethesda)· April 2023

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Enhancing the resilience of plant systems to climate change.
David M Braun, Jacob D Washburn, Jeffrey D Wood

J Exp Bot· April 2023

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Predicting phenotypes from genetic, environment, management, and historical data using CNNs.
Jacob D Washburn, Emre Cimen, Guillaume Ramstein, Timothy Reeves, Patrick O'Briant

Theor Appl Genet· December 2021

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Distinct C sub-types and C bundle sheath isolation in the Paniceae grasses.
Jacob D Washburn, Josh Strable, Patrick Dickinson, Satya S Kothapalli, Julia M Brose

Plant Direct· December 2021

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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible.
Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng, Jacob D Washburn

Genome Res· May 2021

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Phylogeny and multiple independent whole-genome duplication events in the Brassicales.
Makenzie E Mabry, Julia M Brose, Paul D Blischak, Brittany Sutherland, Wade T Dismukes, Jacob D Washburn

Am J Bot· August 2020

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Progressive heterosis in genetically defined tetraploid maize.
Jacob D Washburn, Mitchell J McElfresh, James A Birchler

J Genet Genomics· August 2019

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Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence.
Jacob D Washburn, Maria Katherine Mejia-Guerra, Guillaume Ramstein, Karl A Kremling, Ravi Valluru

Proc Natl Acad Sci U S A· March 2019

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Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses.
Jacob D Washburn, James C Schnable, Gavin C Conant, Thomas P Brutnell, Ying Shao

Sci Rep· May 2018

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Location of low copy genes in chromosomes of Brachiaria spp.
Thaís Furtado Nani, James C Schnable, Jacob D Washburn, Patrice Albert, Welison Andrade Pereira

Mol Biol Rep· April 2018

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Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.
Yue Hao, Jacob D Washburn, Jacob Rosenthal, Brandon Nielsen, Eric Lyons

Genome Biol Evol· March 2018

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Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses.
Jacob D Washburn, James C Schnable, Gavin C Conant, Thomas P Brutnell, Ying Shao

Sci Rep· October 2017

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