Publications by authors named "Michael Freeling"

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Regional active transcription associates with homoeologous exchange breakpoints in synthetic Brassica tetraploids.
Chengcheng Cai, Yinqing Yang, Lei Zhang, Yinan Cui, Jian Wu, Michael Freeling

Plant Physiol· November 2024

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The lack of negative association between TE load and subgenome dominance in synthesized allotetraploids.
Kang Zhang, Lingkui Zhang, Yinan Cui, Yinqing Yang, Jian Wu, Michael Freeling

Proc Natl Acad Sci U S A· October 2023

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Ovule siRNAs methylate protein-coding genes in trans.
Diane Burgess, Hiu Tung Chow, Jeffrey W Grover, Michael Freeling, Rebecca A Mosher

Plant Cell· September 2022

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A cluster of transcripts identifies a transition stage initiating leafy head growth in heading morphotypes of Brassica.
Kang Zhang, Yinqing Yang, Jian Wu, Jianli Liang, Shumin Chen, Michael Freeling

Plant J· May 2022

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qTeller: a tool for comparative multi-genomic gene expression analysis.
Margaret R Woodhouse, Shatabdi Sen, David Schott, John L Portwood, Michael Freeling

Bioinformatics· December 2021

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Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana.
Alan E Yocca, Zefu Lu, Robert J Schmitz, Michael Freeling, Patrick P Edger

Mol Biol Evol· June 2021

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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible.
Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng

Genome Res· May 2021

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Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa.
Xu Cai, Lichun Chang, Tingting Zhang, Haixu Chen, Lei Zhang, Michael Freeling

Genome Biol· May 2021

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Abundant expression of maternal siRNAs is a conserved feature of seed development.
Jeffrey W Grover, Diane Burgess, Timmy Kendall, Abdul Baten, Suresh Pokhrel, Michael Freeling

Proc Natl Acad Sci U S A· June 2020

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Author Correction: Origin and evolution of the octoploid strawberry genome.
Patrick P Edger, Thomas J Poorten, Robert VanBuren, Michael A Hardigan, Marivi Colle, Michael Freeling

Nat Genet· April 2019

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Origin and evolution of the octoploid strawberry genome.
Patrick P Edger, Thomas J Poorten, Robert VanBuren, Michael A Hardigan, Marivi Colle, Michael Freeling

Nat Genet· March 2019

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FAIR: A Call to Make Published Data More Findable, Accessible, Interoperable, and Reusable.
Leonore Reiser, Lisa Harper, Michael Freeling, Bin Han, Sheng Luan

Mol Plant· September 2018

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Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa.
Jeffrey W Grover, Timmy Kendall, Abdul Baten, Diane Burgess, Michael Freeling

Plant J· May 2018

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Gene retention, fractionation and subgenome differences in polyploid plants.
Feng Cheng, Jian Wu, Xu Cai, Jianli Liang, Michael Freeling

Nat Plants· May 2018

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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Sean P Gordon, Bruno Contreras-Moreira, Daniel P Woods, David L Des Marais, Diane Burgess, Michael Freeling

Nat Commun· December 2017

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Picking up the Ball at the K/Pg Boundary: The Distribution of Ancient Polyploidies in the Plant Phylogenetic Tree as a Spandrel of Asexuality with Occasional Sex.
Michael Freeling

Plant Cell· February 2017

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Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa.
Feng Cheng, Chao Sun, Jian Wu, James Schnable, Margaret R Woodhouse, Michael Freeling

New Phytol· July 2016

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The pineapple genome and the evolution of CAM photosynthesis.
Ray Ming, Robert VanBuren, Ching Man Wai, Haibao Tang, Michael C Schatz, Michael Freeling

Nat Genet· December 2015

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Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences.
Michael Freeling, Michael J Scanlon, John E Fowler

Curr Opin Genet Dev· December 2015

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Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum.
Robert VanBuren, Doug Bryant, Patrick P Edger, Haibao Tang, Diane Burgess, Michael Freeling

Nature· November 2015

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Advances in understanding cis regulation of the plant gene with an emphasis on comparative genomics.
Diane G Burgess, Jie Xu, Michael Freeling

Curr Opin Plant Biol· October 2015

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A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis.
Michael Freeling, Jie Xu, Margaret Woodhouse, Damon Lisch

Mol Plant· June 2015

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Co-option of the polarity gene network shapes filament morphology in angiosperms.
Ana Maria Rocha de Almeida, Roxana Yockteng, James Schnable, Elena R Alvarez-Buylla, Michael Freeling

Sci Rep· August 2014

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Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.
Margaret R Woodhouse, Feng Cheng, J Chris Pires, Damon Lisch, Michael Freeling

Proc Natl Acad Sci U S A· April 2014

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The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates.
Diane Burgess, Michael Freeling

Plant Cell· March 2014

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