Publications by authors named "Aimee Taylor"

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Pv3Rs: Plasmodium vivax relapse, recrudescence, and reinfection statistical genetic inference.
Yong See Foo, Michael T White, Aimee R Taylor

Bioinformatics· January 2026

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Probabilistic classification of late treatment failure in uncomplicated falciparum malaria.
Somya Mehra, Aimee R Taylor, Mallika Imwong, Nicholas J White, James A Watson

Nat Commun· November 2025

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Microhaplotype deep sequencing assays to capture Plasmodium vivax infection lineages.
Mariana Kleinecke, Edwin Sutanto, Angela Rumaseb, Kian Soon Hoon, Hidayat Trimarsanto, Aimee R Taylor

Nat Commun· August 2025

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hmmibd-rs: An enhanced hmmIBD implementation for parallelizable identity-by-descent detection from large-scale Plasmodium genomic data.
Bing Guo, Stephen F Schaffner, Aimee R Taylor, Timothy D O'Connor, Shannon Takala-Harrison

Res Sq· July 2025

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Systematic bias in malaria parasite relatedness estimation.
Somya Mehra, Daniel E Neafsey, Michael White, Aimee R Taylor

G3 (Bethesda)· May 2025

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Mortality and life table analysis in a young cohort of pet cats in the UK.
Aimee R Taylor, Jennifer McDonald, Rae Foreman-Worsley, Angie Hibbert, Emily J Blackwell

J Feline Med Surg· April 2025

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Towards an open analysis ecosystem for genomic epidemiology.
Shazia Ruybal-Pesántez, Jorge Amaya-Romero, Sophie Bérubé, Nicholas F Brazeau, Mouhamadou Fadel Diop, Aimee R Taylor

medRxiv· April 2025

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Heterogeneous mosquito exposure increases and co-infections: a modelling study.
Mathilde Grimée, Aimee R Taylor, Michael T White

Proc Biol Sci· December 2024

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Review of MrsFreqPhase methods: methods designed to estimate statistically malaria parasite multiplicity of infection, relatedness, frequency and phase.
Aimee R Taylor, Eric Neubauer Vickers, Bryan Greenhouse

Malar J· October 2024

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Lineage-informative microhaplotypes for recurrence classification and spatio-temporal surveillance of Plasmodium vivax malaria parasites.
Sasha V Siegel, Hidayat Trimarsanto, Roberto Amato, Kathryn Murie, Aimee R Taylor

Nat Commun· August 2024

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Using serological diagnostics to characterize remaining high-incidence pockets of malaria in forest-fringe Cambodia.
Mathilde Grimée, Costanza Tacoli, Mirco Sandfort, Thomas Obadia, Aimee R Taylor

Malar J· February 2024

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Retrospective study and outcome of 307 cats with feline infectious peritonitis treated with legally sourced veterinary compounded preparations of remdesivir and GS-441524 (2020-2022).
Samantha S Taylor, Sally Coggins, Emi N Barker, Danièlle Gunn-Moore, Kamalan Jeevaratnam, Aimee Taylor

J Feline Med Surg· September 2023

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Genomic framework for malaria parasites: challenging but necessary.
Flavia Camponovo, Caroline O Buckee, Aimee R Taylor

Trends Parasitol· April 2023

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Lineage-informative microhaplotypes for spatio-temporal surveillance of malaria parasites.
Sasha V Siegel, Roberto Amato, Hidayat Trimarsanto, Edwin Sutanto, Mariana Kleinecke, Aimee R Taylor

medRxiv· March 2023

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Measurably recombining malaria parasites.
Flavia Camponovo, Caroline O Buckee, Aimee R Taylor

Trends Parasitol· January 2023

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Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis.
Manuela Carrasquilla, Angela M Early, Aimee R Taylor, Angélica Knudson Ospina, Diego F Echeverry

PLoS Pathog· December 2022

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Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: A malaria case study.
Emily LaVerriere, Philipp Schwabl, Manuela Carrasquilla, Aimee R Taylor, Zachary M Johnson

Mol Ecol Resour· August 2022

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Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based study.
Nishant Kishore, Aimee R Taylor, Pierre E Jacob, Navin Vembar, Ted Cohen

Lancet Digit Health· January 2022

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Advances and opportunities in malaria population genomics.
Daniel E Neafsey, Aimee R Taylor, Bronwyn L MacInnis

Nat Rev Genet· August 2021

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Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast.
Aimee R Taylor, Diego F Echeverry, Timothy J C Anderson, Daniel E Neafsey, Caroline O Buckee

PLoS Genet· November 2020

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A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices.
James A Watson, Aimee R Taylor, Elizabeth A Ashley, Arjen Dondorp, Caroline O Buckee

PLoS Genet· October 2020

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Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions.
Pablo Martinez De Salazar, René Niehus, Aimee Taylor, Caroline O'Flaherty Buckee, Marc Lipsitch

Emerg Infect Dis· July 2020

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Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China.
Rene Niehus, Pablo M De Salazar, Aimee R Taylor, Marc Lipsitch

Lancet Infect Dis· July 2020

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A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria.
Ernest Diez Benavente, Monica Campos, Jody Phelan, Debbie Nolder, Jamille G Dombrowski, Aimee R Taylor

PLoS Genet· February 2020

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Quantifying bias of COVID-19 prevalence and severity estimates in Wuhan, China that depend on reported cases in international travelers.
Rene Niehus, Pablo M De Salazar, Aimee R Taylor, Marc Lipsitch

medRxiv· February 2020

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